Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4128

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,916,332	-		Psyr_4126	0.76	+0.5
4,916,333	+		Psyr_4126	0.76	-1.4
4,916,333	+		Psyr_4126	0.76	+0.2
4,916,333	+		Psyr_4126	0.76	+0.5
4,916,333	+		Psyr_4126	0.76	+0.9
4,916,333	+		Psyr_4126	0.76	-2.4
4,916,333	+		Psyr_4126	0.76	-0.8
4,916,333	+		Psyr_4126	0.76	-1.1
4,916,333	+		Psyr_4126	0.76	-0.8
4,916,333	+		Psyr_4126	0.76	-1.8
4,916,333	+		Psyr_4126	0.76	-1.8
4,916,333	+		Psyr_4126	0.76	-1.6
4,916,333	+		Psyr_4126	0.76	-1.8
4,916,333	+		Psyr_4126	0.76	-1.1
4,916,333	+		Psyr_4126	0.76	-2.4
4,916,333	+		Psyr_4126	0.76	-1.3
4,916,334	-		Psyr_4126	0.76	-0.0
4,916,334	-		Psyr_4126	0.76	-1.1
4,916,334	-		Psyr_4126	0.76	-3.5
4,916,334	-		Psyr_4126	0.76	-1.9
4,916,334	-		Psyr_4126	0.76	-1.7
4,916,334	-		Psyr_4126	0.76	-0.3
4,916,334	-		Psyr_4126	0.76	-1.6
4,916,334	-		Psyr_4126	0.76	-2.7
4,916,433	-		Psyr_4126	0.82	-0.7
4,916,490	-		Psyr_4126	0.85	-1.4
4,916,490	-		Psyr_4126	0.85	-2.1
4,916,495	+		Psyr_4126	0.85	-1.4
4,916,627	+				+0.7
4,916,627	+				-1.3
4,916,627	+				-1.3
4,916,627	+				-0.6
4,916,627	+				-0.3
4,916,628	-				-2.3
4,916,628	-				-0.3
4,916,738	+				-1.6
4,916,739	-				-2.3
4,916,802	+				+1.4
4,916,802	+				-2.0
4,916,802	+				-2.1
4,916,802	+				-0.1
4,916,802	+				-1.3
4,916,802	+				-2.6
4,916,803	-				+0.6
4,916,803	-				-0.9
4,916,803	-				+1.3
4,916,803	-				-0.1
4,916,830	+				-1.1
4,916,836	+				-1.7
4,916,836	+				-2.0
4,916,836	+				-2.5
4,916,924	+		Psyr_4127	0.26	-1.0
4,916,924	+		Psyr_4127	0.26	-2.1
4,916,925	-		Psyr_4127	0.26	-0.6
4,916,925	-		Psyr_4127	0.26	-1.1
4,916,926	+		Psyr_4127	0.27	-0.9
4,916,927	-				+2.2
4,916,988	-		Psyr_4127	0.45	-2.5
4,916,989	+		Psyr_4127	0.45	-0.7
4,916,990	-		Psyr_4127	0.45	-0.8
4,916,990	-		Psyr_4127	0.45	+0.6
4,917,041	+		Psyr_4127	0.60	+0.9
4,917,042	-		Psyr_4127	0.61	+0.3
4,917,204	+				-1.5
4,917,223	-				+0.0
4,917,223	-				+0.1
4,917,223	-				-0.4
4,917,223	-				+0.3
4,917,242	+				-2.7
4,917,242	+				-1.6
4,917,243	-				-2.0
4,917,243	-				-2.4
4,917,530	+		Psyr_4128	0.32	-1.1
4,917,531	-		Psyr_4128	0.32	-1.2
4,917,560	+		Psyr_4128	0.35	+0.2
4,917,560	+		Psyr_4128	0.35	-0.1
4,917,560	+		Psyr_4128	0.35	-1.6
4,917,560	+		Psyr_4128	0.35	+0.6
4,917,560	+		Psyr_4128	0.35	-2.1
4,917,560	+		Psyr_4128	0.35	-0.4
4,917,560	+		Psyr_4128	0.35	-2.2
4,917,560	+		Psyr_4128	0.35	-1.1
4,917,560	+		Psyr_4128	0.35	-0.6
4,917,560	+		Psyr_4128	0.35	-0.2
4,917,560	+		Psyr_4128	0.35	-0.4
4,917,560	+		Psyr_4128	0.35	+1.2
4,917,560	+		Psyr_4128	0.35	-1.9
4,917,560	+		Psyr_4128	0.35	+0.4
4,917,560	+		Psyr_4128	0.35	-2.0
4,917,561	-		Psyr_4128	0.36	-0.8
4,917,561	-		Psyr_4128	0.36	-0.6
4,917,561	-		Psyr_4128	0.36	-1.1
4,917,561	-		Psyr_4128	0.36	-0.8
4,917,566	+		Psyr_4128	0.36	-2.0
4,917,566	+		Psyr_4128	0.36	+1.8
4,917,567	-		Psyr_4128	0.36	-1.1
4,917,567	-		Psyr_4128	0.36	-0.4
4,917,567	-		Psyr_4128	0.36	-0.4
4,917,567	-		Psyr_4128	0.36	-0.1
4,917,567	-		Psyr_4128	0.36	-0.6
4,917,567	-		Psyr_4128	0.36	-1.6
4,917,567	-		Psyr_4128	0.36	-3.8
4,917,567	-		Psyr_4128	0.36	-1.3
4,917,711	-		Psyr_4128	0.52	-1.9
4,917,938	+		Psyr_4128	0.77	+0.4
4,917,939	-		Psyr_4128	0.77	-3.4
4,917,993	+		Psyr_4128	0.83	-1.6
4,918,230	+				+0.1
4,918,230	+				-0.4
4,918,231	-				-1.1
4,918,231	-				-0.4
4,918,231	-				+0.1
4,918,279	+				-1.3
4,918,279	+				-3.5
4,918,280	-				+0.2
4,918,280	-				-0.1
4,918,285	+				+0.8
4,918,285	+				-1.2
4,918,285	+				+2.2
4,918,286	-				+0.1
4,918,335	+				-1.0
4,918,335	+				-0.3
4,918,335	+				+0.3
4,918,335	+				+1.9
4,918,335	+				+0.0
4,918,335	+				-2.1
4,918,336	-				+1.2
4,918,336	-				-1.0
4,918,336	-				+0.2
4,918,336	-				+0.4
4,918,365	-				-1.2
4,918,365	-				+0.5
4,918,365	-				-0.4
4,918,446	+		Psyr_4129	0.18	+0.6
4,918,517	+		Psyr_4129	0.28	+1.6
4,918,517	+		Psyr_4129	0.28	+0.6
4,918,517	+		Psyr_4129	0.28	-1.8
4,918,517	+		Psyr_4129	0.28	-1.3
4,918,517	+		Psyr_4129	0.28	-1.1
4,918,517	+		Psyr_4129	0.28	+0.1
4,918,517	+		Psyr_4129	0.28	-0.7
4,918,517	+		Psyr_4129	0.28	-0.8
4,918,517	+		Psyr_4129	0.28	-1.1
4,918,517	+		Psyr_4129	0.28	+0.7
4,918,517	+		Psyr_4129	0.28	-0.9
4,918,517	+		Psyr_4129	0.28	+0.3
4,918,517	+		Psyr_4129	0.28	-0.1
4,918,518	-		Psyr_4129	0.28	-0.1
4,918,518	-		Psyr_4129	0.28	-2.3
4,918,518	-		Psyr_4129	0.28	-0.7
4,918,518	-		Psyr_4129	0.28	+0.6
4,918,518	-		Psyr_4129	0.28	+1.2
4,918,518	-		Psyr_4129	0.28	-1.1
4,918,518	-		Psyr_4129	0.28	+0.5
4,918,518	-		Psyr_4129	0.28	-0.8
4,918,518	-		Psyr_4129	0.28	-0.2
4,918,518	-		Psyr_4129	0.28	-1.7
4,918,518	-		Psyr_4129	0.28	-0.2
4,918,518	-		Psyr_4129	0.28	-0.1
4,918,518	-		Psyr_4129	0.28	-1.1
4,918,518	-		Psyr_4129	0.28	-0.5
4,918,518	-		Psyr_4129	0.28	+0.8
4,918,518	-		Psyr_4129	0.28	-2.0
4,918,772	+		Psyr_4129	0.61	-0.6
4,918,772	+		Psyr_4129	0.61	+0.1
4,918,773	-		Psyr_4129	0.62	+0.2
4,918,828	-		Psyr_4129	0.69	+0.9
4,918,862	+		Psyr_4129	0.73	+0.9
4,918,994	+				+1.2
4,918,994	+				+1.4
4,918,994	+				+1.0
4,919,022	-				-0.9
4,919,064	+				+0.6
4,919,065	-				-2.9
4,919,075	+				+0.5
4,919,075	+				-0.9
4,919,075	+				-2.8
4,919,075	+				-0.7
4,919,075	+				+1.2
4,919,075	+				-0.2
4,919,076	-				-0.8
4,919,076	-				+1.3
4,919,076	-				+2.2
4,919,079	+				+1.9
4,919,079	+				+0.7
4,919,079	+				-0.2
4,919,079	+				-1.2
4,919,079	+				+1.2
4,919,079	+				-2.3
4,919,079	+				+1.8
4,919,080	-				+0.5
4,919,080	-				-3.0
4,919,101	+				-0.3
4,919,101	+				+0.1
4,919,102	-				-1.4
4,919,102	-				-2.3
4,919,102	-				-1.4
4,919,107	+				-0.6
4,919,107	+				+0.9
4,919,107	+				+0.7
4,919,107	+				-1.0
4,919,107	+				-1.4
4,919,107	+				+0.5
4,919,107	+				-0.7
4,919,107	+				+1.8
4,919,107	+				-0.3
4,919,108	-				-0.5
4,919,108	-				-0.8
4,919,108	-				-1.6
4,919,108	-				-2.1
4,919,108	-				-0.9
4,919,108	-				+0.3
4,919,108	-				-2.4
4,919,108	-				+0.6
4,919,108	-				-1.3
4,919,108	-				-0.6
4,919,109	+				+0.2
4,919,109	+				-0.8
4,919,109	+				+0.6
4,919,110	-				-4.1
4,919,110	-				-3.1