Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1396

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,577,993	+		Psyr_1395	0.25	+0.9
1,577,993	+		Psyr_1395	0.25	-2.0
1,577,993	+		Psyr_1395	0.25	-0.2
1,577,993	+		Psyr_1395	0.25	-0.2
1,577,993	+		Psyr_1395	0.25	+0.2
1,577,993	+		Psyr_1395	0.25	-0.7
1,577,994	-		Psyr_1395	0.25	-0.7
1,577,994	-		Psyr_1395	0.25	-2.0
1,577,994	-		Psyr_1395	0.25	-2.2
1,577,994	-		Psyr_1395	0.25	-3.7
1,577,994	-		Psyr_1395	0.25	-3.0
1,577,994	-		Psyr_1395	0.25	+0.6
1,577,994	-		Psyr_1395	0.25	-0.2
1,577,994	-		Psyr_1395	0.25	-1.8
1,577,994	-		Psyr_1395	0.25	+0.7
1,577,994	-		Psyr_1395	0.25	-3.4
1,578,128	+		Psyr_1395	0.35	-3.8
1,578,128	+		Psyr_1395	0.35	-3.0
1,578,129	-		Psyr_1395	0.35	-2.8
1,578,129	-		Psyr_1395	0.35	-2.3
1,578,132	-		Psyr_1395	0.36	-1.8
1,578,139	+		Psyr_1395	0.36	-1.3
1,578,139	+		Psyr_1395	0.36	-2.0
1,578,139	+		Psyr_1395	0.36	+2.3
1,578,139	+		Psyr_1395	0.36	-2.8
1,578,140	-		Psyr_1395	0.36	-2.8
1,578,140	-		Psyr_1395	0.36	-1.2
1,578,631	+		Psyr_1395	0.73	-2.3
1,578,632	-		Psyr_1395	0.73	-1.2
1,578,632	-		Psyr_1395	0.73	+0.2
1,578,842	-		Psyr_1395	0.89	-3.4
1,578,932	-				-2.3
1,578,937	+				-1.8
1,578,938	-				-3.1
1,579,082	+				+0.3
1,579,082	+				+0.1
1,579,083	-				-2.0
1,579,083	-				-1.7
1,579,083	-				-0.3
1,579,084	+				-1.5
1,579,085	-				-0.8
1,579,085	-				-1.9
1,579,144	+				+0.2
1,579,144	+				-2.9
1,579,144	+				-1.5
1,579,144	+				-1.8
1,579,145	-				-1.8
1,579,145	-				-2.0
1,579,145	-				-2.8
1,579,145	-				-3.0
1,579,270	+		Psyr_1396	0.11	-2.7
1,579,270	+		Psyr_1396	0.11	+0.2
1,579,270	+		Psyr_1396	0.11	-3.7
1,579,271	-		Psyr_1396	0.11	+1.7
1,579,432	+		Psyr_1396	0.17	-1.2
1,579,432	+		Psyr_1396	0.17	-1.6
1,579,432	+		Psyr_1396	0.17	-1.2
1,579,432	+		Psyr_1396	0.17	-1.2
1,579,432	+		Psyr_1396	0.17	+0.6
1,579,433	-		Psyr_1396	0.17	-2.4
1,579,433	-		Psyr_1396	0.17	+1.2
1,579,433	-		Psyr_1396	0.17	-2.9
1,579,552	+		Psyr_1396	0.21	-2.0
1,579,553	-		Psyr_1396	0.21	-1.3
1,579,553	-		Psyr_1396	0.21	-4.0
1,579,553	-		Psyr_1396	0.21	-1.0
1,579,597	+		Psyr_1396	0.23	-1.4
1,579,597	+		Psyr_1396	0.23	-1.6
1,579,597	+		Psyr_1396	0.23	-0.8
1,579,597	+		Psyr_1396	0.23	-1.0
1,579,597	+		Psyr_1396	0.23	-0.4
1,579,702	+		Psyr_1396	0.27	-0.8
1,579,702	+		Psyr_1396	0.27	-0.8
1,579,702	+		Psyr_1396	0.27	-2.2
1,579,702	+		Psyr_1396	0.27	-2.5
1,579,702	+		Psyr_1396	0.27	+0.5
1,579,703	-		Psyr_1396	0.27	+0.2
1,579,703	-		Psyr_1396	0.27	-2.1
1,579,703	-		Psyr_1396	0.27	-0.8
1,579,703	-		Psyr_1396	0.27	+0.1
1,579,703	-		Psyr_1396	0.27	+0.2
1,579,703	-		Psyr_1396	0.27	+0.4
1,579,703	-		Psyr_1396	0.27	+1.2
1,579,703	-		Psyr_1396	0.27	-0.8
1,579,703	-		Psyr_1396	0.27	-1.7
1,579,725	+		Psyr_1396	0.28	-0.2
1,579,725	+		Psyr_1396	0.28	-1.8
1,579,725	+		Psyr_1396	0.28	-0.0
1,579,725	+		Psyr_1396	0.28	-0.0
1,579,725	+		Psyr_1396	0.28	-0.8
1,579,725	+		Psyr_1396	0.28	-1.9
1,579,726	-		Psyr_1396	0.28	-0.9
1,579,726	-		Psyr_1396	0.28	-0.4
1,579,726	-		Psyr_1396	0.28	-0.6
1,579,726	-		Psyr_1396	0.28	+1.2
1,579,733	-		Psyr_1396	0.28	-2.2
1,579,733	-		Psyr_1396	0.28	+0.7
1,579,733	-		Psyr_1396	0.28	-2.5
1,579,823	-		Psyr_1396	0.32	-1.2
1,579,855	+		Psyr_1396	0.33	-1.5
1,579,855	+		Psyr_1396	0.33	-1.4
1,579,855	+		Psyr_1396	0.33	-0.4
1,579,855	+		Psyr_1396	0.33	+0.2
1,579,855	+		Psyr_1396	0.33	-1.0
1,579,855	+		Psyr_1396	0.33	+1.2
1,579,856	-		Psyr_1396	0.33	-0.8
1,579,856	-		Psyr_1396	0.33	-1.4
1,580,035	-		Psyr_1396	0.40	-0.8
1,580,035	-		Psyr_1396	0.40	+0.2
1,580,236	+		Psyr_1396	0.47	-1.7
1,580,334	+		Psyr_1396	0.51	-0.8
1,580,335	-		Psyr_1396	0.51	-3.3
1,580,349	-		Psyr_1396	0.51	+1.2
1,580,671	+		Psyr_1396	0.64	+0.2
1,580,671	+		Psyr_1396	0.64	-1.2
1,580,683	+		Psyr_1396	0.64	-1.2
1,580,812	+		Psyr_1396	0.69	-1.5
1,580,812	+		Psyr_1396	0.69	-2.5
1,580,813	-		Psyr_1396	0.69	+0.2
1,580,813	-		Psyr_1396	0.69	-3.4
1,580,813	-		Psyr_1396	0.69	-1.9
1,580,813	-		Psyr_1396	0.69	-2.3
1,580,813	-		Psyr_1396	0.69	+0.2
1,580,813	-		Psyr_1396	0.69	-2.8
1,580,813	-		Psyr_1396	0.69	+0.6
1,580,816	+		Psyr_1396	0.69	-1.9
1,580,817	-		Psyr_1396	0.69	-3.7
1,580,817	-		Psyr_1396	0.69	-1.7
1,580,860	+		Psyr_1396	0.71	-0.8
1,580,860	+		Psyr_1396	0.71	-0.4
1,580,861	-		Psyr_1396	0.71	-0.2
1,580,969	+		Psyr_1396	0.75	-2.8
1,580,969	+		Psyr_1396	0.75	-2.3
1,580,970	-		Psyr_1396	0.75	-1.4
1,580,970	-		Psyr_1396	0.75	-1.0
1,580,970	-		Psyr_1396	0.75	-2.3
1,580,970	-		Psyr_1396	0.75	-2.4
1,580,970	-		Psyr_1396	0.75	-2.2
1,580,970	-		Psyr_1396	0.75	-0.5
1,581,007	+		Psyr_1396	0.76	-0.5
1,581,057	+		Psyr_1396	0.78	-3.5
1,581,057	+		Psyr_1396	0.78	-2.8
1,581,201	+		Psyr_1396	0.84	-2.1
1,581,371	+				-0.7
1,581,371	+				-1.0
1,581,371	+				-1.2
1,581,371	+				-1.0
1,581,371	+				-1.5
1,581,371	+				-0.8
1,581,372	-				-2.5
1,581,372	-				-1.1
1,581,373	+				+1.2
1,581,373	+				-1.8
1,581,449	-				-2.7
1,581,483	+				-0.3
1,581,483	+				-2.5
1,581,483	+				-1.1
1,581,484	-				-2.2
1,581,484	-				-1.5
1,581,484	-				-0.1
1,581,484	-				+2.2
1,581,486	-				-2.4
1,581,538	+				-1.8
1,581,669	+				-0.6
1,581,669	+				-0.8
1,581,669	+				-0.9
1,581,669	+				-3.4
1,581,669	+				+0.2
1,581,670	-				+0.5
1,581,670	-				-1.4
1,581,670	-				-0.2
1,581,682	+				-0.9
1,581,682	+				+0.3
1,581,683	-				+2.6
1,581,693	-				+0.4
1,581,796	+				-1.2
1,581,797	-				-0.9
1,581,799	+				+1.0
1,581,800	-				+0.6
1,581,800	-				-2.3
1,581,833	+				+0.2
1,581,833	+				-0.2
1,581,834	-				+0.7
1,581,846	+				+0.2
1,581,846	+				-0.4
1,581,847	-				+0.2
1,581,847	-				+0.1
1,581,847	-				-0.4
1,581,866	-				+0.4
1,582,129	-				+0.5
1,582,129	-				+1.3
1,582,156	+				+1.2
1,582,156	+				-1.5
1,582,156	+				-1.2
1,582,156	+				+1.3
1,582,156	+				+0.6
1,582,157	-				-1.7
1,582,157	-				-1.3
1,582,157	-				+1.0
1,582,157	-				+0.4
1,582,159	-				+1.0
1,582,358	+				-1.4
1,582,420	-				+1.0
1,582,509	+				+1.0
1,582,544	+				-0.1
1,582,544	+				-0.0
1,582,544	+				+0.6
1,582,545	-				+1.3
1,582,545	-				-0.3
1,582,545	-				-2.5
1,582,545	-				+0.9
1,582,545	-				-1.2
1,582,545	-				-1.1
1,582,565	+				-0.4
1,582,565	+				-3.4
1,582,565	+				-1.8
1,582,566	-				+0.5
1,582,566	-				-0.4