Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0798 and Psyr_0799 are separated by 225 nucleotides Psyr_0799 and Psyr_0800 are separated by 174 nucleotides Psyr_0800 and Psyr_0801 are separated by 119 nucleotides
Psyr_0798: Psyr_0798 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 903,509 to 905,203
_0798
Psyr_0799: Psyr_0799 - Fimbrial protein pilin, at 905,429 to 905,848
_0799
Psyr_0800: Psyr_0800 - Protein of unknown function DUF1523, at 906,023 to 906,568
_0800
Psyr_0801: Psyr_0801 - conserved hypothetical protein, at 906,688 to 907,686
_0801
Position (kb) 906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 905.082 kb on + strand at 905.082 kb on + strand at 905.082 kb on + strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.083 kb on - strand at 905.121 kb on + strand at 905.121 kb on + strand at 905.121 kb on + strand at 905.146 kb on + strand at 905.146 kb on + strand at 905.146 kb on + strand at 905.147 kb on - strand at 905.147 kb on - strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.150 kb on + strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.151 kb on - strand at 905.203 kb on + strand at 905.203 kb on + strand at 905.204 kb on - strand at 905.235 kb on - strand at 905.236 kb on + strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.237 kb on - strand at 905.238 kb on - strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.262 kb on + strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.263 kb on - strand at 905.315 kb on + strand at 905.315 kb on + strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.316 kb on - strand at 905.337 kb on + strand at 905.337 kb on + strand at 905.343 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.404 kb on + strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.405 kb on - strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.424 kb on + strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.425 kb on - strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.428 kb on + strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.429 kb on - strand at 905.449 kb on + strand at 905.450 kb on - strand at 905.489 kb on - strand, within Psyr_0799 at 905.489 kb on - strand, within Psyr_0799 at 905.526 kb on - strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.527 kb on + strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.528 kb on - strand, within Psyr_0799 at 905.570 kb on - strand, within Psyr_0799 at 905.573 kb on + strand, within Psyr_0799 at 905.574 kb on - strand, within Psyr_0799 at 905.574 kb on - strand, within Psyr_0799 at 905.626 kb on + strand, within Psyr_0799 at 905.627 kb on - strand, within Psyr_0799 at 905.627 kb on - strand, within Psyr_0799 at 905.638 kb on + strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.639 kb on - strand, within Psyr_0799 at 905.662 kb on + strand, within Psyr_0799 at 905.716 kb on + strand, within Psyr_0799 at 905.717 kb on - strand, within Psyr_0799 at 905.717 kb on - strand, within Psyr_0799 at 905.722 kb on + strand, within Psyr_0799 at 905.722 kb on + strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.723 kb on - strand, within Psyr_0799 at 905.725 kb on + strand, within Psyr_0799 at 905.726 kb on - strand, within Psyr_0799 at 905.733 kb on + strand, within Psyr_0799 at 905.734 kb on - strand, within Psyr_0799 at 905.734 kb on - strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.779 kb on + strand, within Psyr_0799 at 905.839 kb on + strand at 905.839 kb on + strand at 905.839 kb on + strand at 905.846 kb on + strand at 905.847 kb on - strand at 905.861 kb on + strand at 905.861 kb on + strand at 905.861 kb on + strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.862 kb on - strand at 905.881 kb on + strand at 906.007 kb on + strand at 906.024 kb on + strand at 906.058 kb on + strand at 906.058 kb on + strand at 906.058 kb on + strand at 906.059 kb on - strand at 906.217 kb on - strand, within Psyr_0800 at 906.219 kb on + strand, within Psyr_0800 at 906.256 kb on - strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.381 kb on + strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.382 kb on - strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.495 kb on + strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.496 kb on - strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.498 kb on + strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.499 kb on - strand, within Psyr_0800 at 906.507 kb on - strand, within Psyr_0800 at 906.533 kb on + strand at 906.569 kb on - strand at 906.637 kb on + strand at 906.638 kb on - strand at 906.638 kb on - strand at 906.734 kb on + strand at 906.734 kb on + strand at 906.735 kb on - strand at 906.915 kb on + strand, within Psyr_0801 at 906.916 kb on - strand, within Psyr_0801 at 906.916 kb on - strand, within Psyr_0801 at 906.916 kb on - strand, within Psyr_0801 at 906.917 kb on + strand, within Psyr_0801 at 906.918 kb on - strand, within Psyr_0801 at 906.918 kb on - strand, within Psyr_0801 at 906.918 kb on - strand, within Psyr_0801 at 906.928 kb on + strand, within Psyr_0801 at 906.928 kb on + strand, within Psyr_0801 at 907.162 kb on + strand, within Psyr_0801 at 907.162 kb on + strand, within Psyr_0801 at 907.252 kb on + strand, within Psyr_0801 at 907.252 kb on + strand, within Psyr_0801 at 907.253 kb on - strand, within Psyr_0801 at 907.257 kb on + strand, within Psyr_0801 at 907.258 kb on - strand, within Psyr_0801 at 907.306 kb on + strand, within Psyr_0801 at 907.306 kb on + strand, within Psyr_0801 at 907.306 kb on + strand, within Psyr_0801 at 907.306 kb on + strand, within Psyr_0801 at 907.306 kb on + strand, within Psyr_0801 at 907.307 kb on - strand, within Psyr_0801 at 907.307 kb on - strand, within Psyr_0801 at 907.307 kb on - strand, within Psyr_0801 at 907.307 kb on - strand, within Psyr_0801 at 907.307 kb on - strand, within Psyr_0801 at 907.424 kb on + strand, within Psyr_0801 at 907.424 kb on + strand, within Psyr_0801 at 907.424 kb on + strand, within Psyr_0801 at 907.425 kb on - strand, within Psyr_0801 at 907.425 kb on - strand, within Psyr_0801 at 907.425 kb on - strand, within Psyr_0801 at 907.552 kb on + strand, within Psyr_0801
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 905,082 + +1.0 905,082 + -0.7 905,082 + +0.6 905,083 - -0.2 905,083 - +0.4 905,083 - -1.2 905,083 - +0.3 905,121 + +0.8 905,121 + +0.8 905,121 + +0.2 905,146 + -1.6 905,146 + -0.6 905,146 + +0.9 905,147 - -2.4 905,147 - +0.7 905,150 + -1.0 905,150 + +0.2 905,150 + -1.6 905,150 + +0.4 905,150 + +0.7 905,150 + +2.1 905,151 - +0.2 905,151 - +0.7 905,151 - -0.6 905,151 - +0.4 905,151 - +0.7 905,151 - +0.7 905,151 - +0.7 905,151 - +1.2 905,203 + +0.9 905,203 + +1.3 905,204 - -0.4 905,235 - -1.1 905,236 + +0.1 905,237 - +1.2 905,237 - +1.0 905,237 - -0.6 905,237 - -1.8 905,237 - +0.5 905,238 - -0.4 905,262 + -2.4 905,262 + +1.2 905,262 + +1.4 905,263 - -0.2 905,263 - +0.6 905,263 - -0.5 905,263 - -0.5 905,315 + -0.4 905,315 + -0.6 905,316 - -0.9 905,316 - +0.5 905,316 - +0.6 905,337 + -2.0 905,337 + +0.0 905,343 + +0.0 905,404 + -0.5 905,404 + +0.6 905,404 + -1.4 905,405 - +0.6 905,405 - -0.2 905,405 - -1.8 905,405 - -1.2 905,405 - -1.0 905,424 + -1.2 905,424 + +0.0 905,424 + -0.0 905,424 + -0.2 905,424 + -1.3 905,424 + -1.2 905,424 + +0.5 905,425 - -0.2 905,425 - -0.8 905,425 - +1.2 905,425 - +0.8 905,425 - +0.4 905,425 - +3.2 905,425 - -1.2 905,425 - -0.4 905,425 - +0.3 905,428 + +1.0 905,428 + +0.7 905,428 + +0.8 905,429 - +1.1 905,429 - +1.8 905,429 - +0.9 905,429 - -0.6 905,429 - +1.2 905,429 - +0.9 905,429 - -0.5 905,449 + -2.3 905,450 - +1.6 905,489 - Psyr_0799 0.14 -0.9 905,489 - Psyr_0799 0.14 -0.8 905,526 - Psyr_0799 0.23 +1.0 905,527 + Psyr_0799 0.23 +0.6 905,527 + Psyr_0799 0.23 +0.1 905,527 + Psyr_0799 0.23 -0.2 905,527 + Psyr_0799 0.23 +0.6 905,527 + Psyr_0799 0.23 -1.7 905,527 + Psyr_0799 0.23 +0.2 905,527 + Psyr_0799 0.23 +1.6 905,528 - Psyr_0799 0.24 -1.0 905,528 - Psyr_0799 0.24 +1.7 905,528 - Psyr_0799 0.24 +1.2 905,570 - Psyr_0799 0.34 -2.3 905,573 + Psyr_0799 0.34 +1.0 905,574 - Psyr_0799 0.35 +0.0 905,574 - Psyr_0799 0.35 +0.2 905,626 + Psyr_0799 0.47 +0.6 905,627 - Psyr_0799 0.47 +1.2 905,627 - Psyr_0799 0.47 +0.5 905,638 + Psyr_0799 0.50 -0.1 905,639 - Psyr_0799 0.50 +1.2 905,639 - Psyr_0799 0.50 -2.3 905,662 + Psyr_0799 0.55 +0.5 905,716 + Psyr_0799 0.68 +1.8 905,717 - Psyr_0799 0.69 -2.2 905,717 - Psyr_0799 0.69 -0.6 905,722 + Psyr_0799 0.70 +0.6 905,722 + Psyr_0799 0.70 -1.6 905,723 - Psyr_0799 0.70 +0.5 905,723 - Psyr_0799 0.70 +0.4 905,723 - Psyr_0799 0.70 -0.6 905,725 + Psyr_0799 0.70 +0.6 905,726 - Psyr_0799 0.71 +1.9 905,733 + Psyr_0799 0.72 +1.2 905,734 - Psyr_0799 0.73 +0.3 905,734 - Psyr_0799 0.73 -1.6 905,779 + Psyr_0799 0.83 -1.8 905,779 + Psyr_0799 0.83 -2.3 905,779 + Psyr_0799 0.83 -1.3 905,839 + +0.4 905,839 + -1.0 905,839 + -0.6 905,846 + +0.6 905,847 - +2.8 905,861 + -2.0 905,861 + +0.5 905,861 + +1.8 905,862 - -1.6 905,862 - +0.6 905,862 - +1.0 905,881 + -0.5 906,007 + +0.0 906,024 + -0.8 906,058 + +0.1 906,058 + -0.4 906,058 + -0.4 906,059 - -1.9 906,217 - Psyr_0800 0.36 +0.8 906,219 + Psyr_0800 0.36 +0.6 906,256 - Psyr_0800 0.43 -0.3 906,381 + Psyr_0800 0.66 +3.0 906,381 + Psyr_0800 0.66 -0.9 906,381 + Psyr_0800 0.66 +2.2 906,381 + Psyr_0800 0.66 +1.1 906,381 + Psyr_0800 0.66 +0.3 906,381 + Psyr_0800 0.66 +0.9 906,381 + Psyr_0800 0.66 -0.6 906,382 - Psyr_0800 0.66 +0.7 906,382 - Psyr_0800 0.66 +1.2 906,382 - Psyr_0800 0.66 -1.4 906,382 - Psyr_0800 0.66 +0.6 906,495 + Psyr_0800 0.86 -1.9 906,495 + Psyr_0800 0.86 -0.5 906,495 + Psyr_0800 0.86 +1.8 906,495 + Psyr_0800 0.86 -1.8 906,495 + Psyr_0800 0.86 -1.6 906,495 + Psyr_0800 0.86 -0.6 906,496 - Psyr_0800 0.87 -0.5 906,496 - Psyr_0800 0.87 -0.8 906,496 - Psyr_0800 0.87 -1.9 906,496 - Psyr_0800 0.87 +0.4 906,496 - Psyr_0800 0.87 -0.2 906,496 - Psyr_0800 0.87 +1.4 906,496 - Psyr_0800 0.87 +1.3 906,498 + Psyr_0800 0.87 +0.9 906,498 + Psyr_0800 0.87 -1.8 906,498 + Psyr_0800 0.87 +0.3 906,499 - Psyr_0800 0.87 +0.4 906,499 - Psyr_0800 0.87 -0.1 906,499 - Psyr_0800 0.87 +1.9 906,499 - Psyr_0800 0.87 +0.3 906,499 - Psyr_0800 0.87 -0.7 906,507 - Psyr_0800 0.89 -0.4 906,533 + -0.2 906,569 - +0.2 906,637 + -2.3 906,638 - -1.2 906,638 - -0.6 906,734 + -0.3 906,734 + +0.3 906,735 - -3.3 906,915 + Psyr_0801 0.23 +0.8 906,916 - Psyr_0801 0.23 +0.2 906,916 - Psyr_0801 0.23 +0.5 906,916 - Psyr_0801 0.23 -0.8 906,917 + Psyr_0801 0.23 +0.2 906,918 - Psyr_0801 0.23 +0.7 906,918 - Psyr_0801 0.23 +4.6 906,918 - Psyr_0801 0.23 -1.2 906,928 + Psyr_0801 0.24 -0.8 906,928 + Psyr_0801 0.24 +0.1 907,162 + Psyr_0801 0.47 +0.3 907,162 + Psyr_0801 0.47 -0.4 907,252 + Psyr_0801 0.56 -0.7 907,252 + Psyr_0801 0.56 +0.8 907,253 - Psyr_0801 0.57 +0.0 907,257 + Psyr_0801 0.57 -0.8 907,258 - Psyr_0801 0.57 +1.3 907,306 + Psyr_0801 0.62 +0.0 907,306 + Psyr_0801 0.62 +0.7 907,306 + Psyr_0801 0.62 +1.8 907,306 + Psyr_0801 0.62 -0.1 907,306 + Psyr_0801 0.62 -1.1 907,307 - Psyr_0801 0.62 +1.0 907,307 - Psyr_0801 0.62 +1.4 907,307 - Psyr_0801 0.62 -0.5 907,307 - Psyr_0801 0.62 -0.8 907,307 - Psyr_0801 0.62 +0.4 907,424 + Psyr_0801 0.74 -1.5 907,424 + Psyr_0801 0.74 +1.0 907,424 + Psyr_0801 0.74 -1.6 907,425 - Psyr_0801 0.74 -3.0 907,425 - Psyr_0801 0.74 +1.2 907,425 - Psyr_0801 0.74 -0.8 907,552 + Psyr_0801 0.86 -0.6
Or see this region's nucleotide sequence