Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0670 and Psyr_0671 are separated by 285 nucleotides Psyr_0671 and Psyr_0672 overlap by 4 nucleotides
Psyr_0670: Psyr_0670 - Short-chain dehydrogenase/reductase SDR, at 759,438 to 760,163
_0670
Psyr_0671: Psyr_0671 - nucleoside ABC transporter membrane protein, at 760,449 to 761,378
_0671
Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475
_0672
Position (kb) 760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 759.496 kb on + strand at 759.639 kb on - strand, within Psyr_0670 at 759.639 kb on - strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.676 kb on + strand, within Psyr_0670 at 759.677 kb on - strand, within Psyr_0670 at 760.020 kb on + strand, within Psyr_0670 at 760.020 kb on + strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.021 kb on - strand, within Psyr_0670 at 760.119 kb on - strand at 760.207 kb on + strand at 760.207 kb on + strand at 760.207 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.258 kb on + strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.259 kb on - strand at 760.287 kb on + strand at 760.297 kb on + strand at 760.424 kb on - strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.435 kb on + strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.436 kb on - strand at 760.441 kb on + strand at 760.441 kb on + strand at 760.441 kb on + strand at 760.441 kb on + strand at 760.441 kb on + strand at 760.442 kb on - strand at 760.442 kb on - strand at 760.442 kb on - strand at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.552 kb on + strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.553 kb on - strand, within Psyr_0671 at 760.639 kb on + strand, within Psyr_0671 at 760.639 kb on + strand, within Psyr_0671 at 760.640 kb on - strand, within Psyr_0671 at 760.640 kb on - strand, within Psyr_0671 at 760.744 kb on + strand, within Psyr_0671 at 760.760 kb on - strand, within Psyr_0671 at 760.939 kb on + strand, within Psyr_0671 at 760.939 kb on + strand, within Psyr_0671 at 760.939 kb on + strand, within Psyr_0671 at 760.940 kb on - strand, within Psyr_0671 at 760.940 kb on - strand, within Psyr_0671 at 761.351 kb on + strand at 761.352 kb on - strand at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.550 kb on + strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.551 kb on - strand, within Psyr_0672 at 761.631 kb on + strand, within Psyr_0672 at 761.631 kb on + strand, within Psyr_0672 at 761.800 kb on - strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.868 kb on + strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.869 kb on - strand, within Psyr_0672 at 761.988 kb on + strand, within Psyr_0672 at 761.989 kb on - strand, within Psyr_0672 at 761.989 kb on - strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.012 kb on + strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.013 kb on - strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.025 kb on + strand, within Psyr_0672 at 762.026 kb on - strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.154 kb on + strand, within Psyr_0672 at 762.155 kb on - strand, within Psyr_0672 at 762.155 kb on - strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.212 kb on + strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672 at 762.213 kb on - strand, within Psyr_0672
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 759,496 + +1.3 759,639 - Psyr_0670 0.28 +1.2 759,639 - Psyr_0670 0.28 +0.2 759,676 + Psyr_0670 0.33 -1.8 759,676 + Psyr_0670 0.33 +0.9 759,676 + Psyr_0670 0.33 -0.6 759,676 + Psyr_0670 0.33 +0.2 759,677 - Psyr_0670 0.33 -0.6 760,020 + Psyr_0670 0.80 +0.5 760,020 + Psyr_0670 0.80 -1.8 760,021 - Psyr_0670 0.80 +1.6 760,021 - Psyr_0670 0.80 +0.8 760,021 - Psyr_0670 0.80 +0.3 760,119 - -0.8 760,207 + -0.4 760,207 + +0.2 760,207 + -1.9 760,258 + +0.2 760,258 + +0.2 760,258 + -0.6 760,258 + +0.2 760,258 + -0.1 760,258 + +0.2 760,258 + +1.1 760,258 + +0.9 760,259 - +0.7 760,259 - +0.4 760,259 - -1.2 760,287 + -0.7 760,297 + -0.8 760,424 - -0.1 760,435 + -0.1 760,435 + -1.4 760,435 + +1.0 760,435 + -0.8 760,435 + -2.3 760,435 + +0.5 760,435 + +0.7 760,435 + +1.3 760,435 + +0.5 760,435 + -1.8 760,436 - +0.4 760,436 - +1.2 760,436 - +0.0 760,436 - -1.5 760,436 - +0.2 760,436 - +0.4 760,436 - -1.1 760,436 - +0.3 760,441 + +0.9 760,441 + -2.1 760,441 + +0.7 760,441 + +2.0 760,441 + -0.8 760,442 - -0.7 760,442 - +0.6 760,442 - -0.1 760,552 + Psyr_0671 0.11 +1.4 760,552 + Psyr_0671 0.11 -1.0 760,552 + Psyr_0671 0.11 +1.2 760,552 + Psyr_0671 0.11 -0.6 760,552 + Psyr_0671 0.11 +0.1 760,552 + Psyr_0671 0.11 +1.7 760,552 + Psyr_0671 0.11 -0.2 760,553 - Psyr_0671 0.11 +0.6 760,553 - Psyr_0671 0.11 -1.4 760,553 - Psyr_0671 0.11 -1.2 760,553 - Psyr_0671 0.11 +0.1 760,553 - Psyr_0671 0.11 -0.6 760,553 - Psyr_0671 0.11 -1.3 760,553 - Psyr_0671 0.11 -0.7 760,639 + Psyr_0671 0.20 -0.3 760,639 + Psyr_0671 0.20 +0.4 760,640 - Psyr_0671 0.21 -0.2 760,640 - Psyr_0671 0.21 +0.8 760,744 + Psyr_0671 0.32 -2.3 760,760 - Psyr_0671 0.33 -1.4 760,939 + Psyr_0671 0.53 -1.3 760,939 + Psyr_0671 0.53 +0.6 760,939 + Psyr_0671 0.53 -0.2 760,940 - Psyr_0671 0.53 -1.3 760,940 - Psyr_0671 0.53 -0.3 761,351 + +0.3 761,352 - -0.7 761,550 + Psyr_0672 0.16 +1.0 761,550 + Psyr_0672 0.16 -2.5 761,550 + Psyr_0672 0.16 -1.2 761,550 + Psyr_0672 0.16 +1.4 761,551 - Psyr_0672 0.16 +0.8 761,551 - Psyr_0672 0.16 +1.8 761,551 - Psyr_0672 0.16 -0.0 761,551 - Psyr_0672 0.16 +2.7 761,631 + Psyr_0672 0.23 -0.2 761,631 + Psyr_0672 0.23 +0.3 761,800 - Psyr_0672 0.39 -1.8 761,868 + Psyr_0672 0.45 +0.5 761,868 + Psyr_0672 0.45 -0.8 761,868 + Psyr_0672 0.45 -0.4 761,869 - Psyr_0672 0.45 +0.6 761,869 - Psyr_0672 0.45 +0.8 761,869 - Psyr_0672 0.45 -0.1 761,988 + Psyr_0672 0.56 +0.1 761,989 - Psyr_0672 0.56 -0.8 761,989 - Psyr_0672 0.56 -1.1 762,012 + Psyr_0672 0.58 -0.6 762,012 + Psyr_0672 0.58 -1.1 762,012 + Psyr_0672 0.58 +1.1 762,012 + Psyr_0672 0.58 -1.2 762,012 + Psyr_0672 0.58 +1.2 762,013 - Psyr_0672 0.58 +0.3 762,013 - Psyr_0672 0.58 -1.2 762,013 - Psyr_0672 0.58 -0.7 762,025 + Psyr_0672 0.59 -0.0 762,025 + Psyr_0672 0.59 -1.4 762,025 + Psyr_0672 0.59 -0.7 762,026 - Psyr_0672 0.59 +0.8 762,154 + Psyr_0672 0.71 +0.2 762,154 + Psyr_0672 0.71 -0.2 762,154 + Psyr_0672 0.71 -1.1 762,155 - Psyr_0672 0.71 +1.2 762,155 - Psyr_0672 0.71 +0.2 762,212 + Psyr_0672 0.76 +0.8 762,212 + Psyr_0672 0.76 +0.8 762,212 + Psyr_0672 0.76 -0.5 762,212 + Psyr_0672 0.76 -1.0 762,212 + Psyr_0672 0.76 -0.1 762,212 + Psyr_0672 0.76 -0.6 762,212 + Psyr_0672 0.76 -1.8 762,212 + Psyr_0672 0.76 -0.1 762,212 + Psyr_0672 0.76 +0.9 762,212 + Psyr_0672 0.76 -1.5 762,212 + Psyr_0672 0.76 -0.9 762,212 + Psyr_0672 0.76 -1.4 762,212 + Psyr_0672 0.76 +0.2 762,212 + Psyr_0672 0.76 -0.2 762,212 + Psyr_0672 0.76 -1.6 762,212 + Psyr_0672 0.76 -0.4 762,212 + Psyr_0672 0.76 -0.9 762,212 + Psyr_0672 0.76 +1.8 762,212 + Psyr_0672 0.76 -0.9 762,213 - Psyr_0672 0.76 +1.3 762,213 - Psyr_0672 0.76 +1.6 762,213 - Psyr_0672 0.76 -1.0 762,213 - Psyr_0672 0.76 -0.8 762,213 - Psyr_0672 0.76 +2.5 762,213 - Psyr_0672 0.76 -3.5 762,213 - Psyr_0672 0.76 -1.5 762,213 - Psyr_0672 0.76 -0.6 762,213 - Psyr_0672 0.76 +2.2 762,213 - Psyr_0672 0.76 +0.7 762,213 - Psyr_0672 0.76 +1.2 762,213 - Psyr_0672 0.76 -2.0 762,213 - Psyr_0672 0.76 +0.2 762,213 - Psyr_0672 0.76 -0.6 762,213 - Psyr_0672 0.76 +1.8
Or see this region's nucleotide sequence