Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0556 and Psyr_0557 are separated by 88 nucleotides Psyr_0557 and Psyr_0558 are separated by 65 nucleotides
Psyr_0556: Psyr_0556 - Histidine kinase, HAMP region, at 629,377 to 630,918
_0556
Psyr_0557: Psyr_0557 - phosphoserine phosphatase, at 631,007 to 632,263
_0557
Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113
_0558
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 630.954 kb on - strand at 630.954 kb on - strand at 630.956 kb on - strand at 631.014 kb on + strand at 631.014 kb on + strand at 631.015 kb on - strand at 631.015 kb on - strand at 631.015 kb on - strand at 631.069 kb on + strand at 631.211 kb on - strand, within Psyr_0557 at 631.257 kb on - strand, within Psyr_0557 at 631.413 kb on - strand, within Psyr_0557 at 631.791 kb on + strand, within Psyr_0557 at 631.881 kb on - strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 631.953 kb on - strand, within Psyr_0557 at 632.225 kb on + strand at 632.225 kb on + strand at 632.225 kb on + strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.430 kb on - strand at 632.430 kb on - strand at 632.563 kb on + strand, within Psyr_0558 at 632.564 kb on - strand, within Psyr_0558 at 632.592 kb on - strand, within Psyr_0558 at 632.686 kb on + strand, within Psyr_0558 at 632.687 kb on - strand, within Psyr_0558 at 632.746 kb on - strand, within Psyr_0558 at 632.829 kb on + strand, within Psyr_0558 at 632.916 kb on - strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.130 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 630,954 - -2.6 630,954 - +0.1 630,956 - -2.7 631,014 + -0.4 631,014 + +0.7 631,015 - -2.0 631,015 - -0.5 631,015 - -1.4 631,069 + -2.4 631,211 - Psyr_0557 0.16 -2.4 631,257 - Psyr_0557 0.20 -1.8 631,413 - Psyr_0557 0.32 -2.5 631,791 + Psyr_0557 0.62 -1.1 631,881 - Psyr_0557 0.70 -3.0 631,913 + Psyr_0557 0.72 -2.0 631,913 + Psyr_0557 0.72 -2.4 631,913 + Psyr_0557 0.72 -0.1 631,952 + Psyr_0557 0.75 -0.8 631,952 + Psyr_0557 0.75 -3.3 631,952 + Psyr_0557 0.75 -1.7 631,952 + Psyr_0557 0.75 -0.8 631,952 + Psyr_0557 0.75 -3.2 631,953 - Psyr_0557 0.75 -2.1 631,953 - Psyr_0557 0.75 -1.5 631,953 - Psyr_0557 0.75 -2.6 631,953 - Psyr_0557 0.75 -3.0 632,225 + -2.3 632,225 + -2.6 632,225 + -1.3 632,226 - -1.4 632,226 - +0.2 632,226 - -1.4 632,405 + -0.0 632,405 + -1.1 632,405 + +1.5 632,405 + -0.4 632,405 + -0.0 632,405 + -1.1 632,405 + -0.3 632,406 - +0.6 632,406 - -0.7 632,406 - +0.6 632,406 - +0.5 632,406 - -2.3 632,406 - +1.5 632,429 + -1.4 632,429 + +1.5 632,429 + -1.6 632,429 + +0.3 632,429 + +1.2 632,429 + +0.2 632,430 - +1.6 632,430 - -0.4 632,563 + Psyr_0558 0.13 +0.1 632,564 - Psyr_0558 0.13 -0.5 632,592 - Psyr_0558 0.15 -0.3 632,686 + Psyr_0558 0.20 -2.5 632,687 - Psyr_0558 0.20 -0.0 632,746 - Psyr_0558 0.23 +1.6 632,829 + Psyr_0558 0.28 +0.4 632,916 - Psyr_0558 0.33 +2.5 633,074 + Psyr_0558 0.42 +1.5 633,074 + Psyr_0558 0.42 +1.2 633,074 + Psyr_0558 0.42 +0.8 633,129 + Psyr_0558 0.45 -0.7 633,129 + Psyr_0558 0.45 +1.7 633,130 - Psyr_0558 0.45 -0.9 633,255 - Psyr_0558 0.52 -0.7 633,255 - Psyr_0558 0.52 +1.7
Or see this region's nucleotide sequence