Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0219

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0218 and Psyr_0219 are separated by 28 nucleotides Psyr_0218: Psyr_0218 - N-acetylglutamate kinase, at 231,075 to 231,980 _0218 Psyr_0219: Psyr_0219 - phosphomannomutase, at 232,009 to 233,406 _0219 Position (kb) 232 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 231.043 kb on - strandat 231.065 kb on + strandat 231.066 kb on - strandat 231.109 kb on - strandat 231.109 kb on - strandat 231.920 kb on - strandat 232.291 kb on - strand, within Psyr_0219at 232.291 kb on - strand, within Psyr_0219at 232.370 kb on + strand, within Psyr_0219at 232.370 kb on + strand, within Psyr_0219at 232.370 kb on + strand, within Psyr_0219at 232.370 kb on + strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.371 kb on - strand, within Psyr_0219at 232.375 kb on - strand, within Psyr_0219at 232.375 kb on - strand, within Psyr_0219at 232.375 kb on - strand, within Psyr_0219at 232.925 kb on + strand, within Psyr_0219at 232.926 kb on - strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.060 kb on + strand, within Psyr_0219at 233.061 kb on - strand, within Psyr_0219at 233.061 kb on - strand, within Psyr_0219at 233.061 kb on - strand, within Psyr_0219at 233.126 kb on + strand, within Psyr_0219at 233.127 kb on - strand, within Psyr_0219at 233.127 kb on - strand, within Psyr_0219at 233.127 kb on - strand, within Psyr_0219at 233.127 kb on - strand, within Psyr_0219at 233.127 kb on - strand, within Psyr_0219at 233.129 kb on + strand, within Psyr_0219at 233.129 kb on + strand, within Psyr_0219at 233.130 kb on - strand, within Psyr_0219at 233.155 kb on + strand, within Psyr_0219at 233.155 kb on + strand, within Psyr_0219at 233.155 kb on + strand, within Psyr_0219at 233.155 kb on + strand, within Psyr_0219at 233.155 kb on + strand, within Psyr_0219at 233.156 kb on - strand, within Psyr_0219at 233.156 kb on - strand, within Psyr_0219at 233.156 kb on - strand, within Psyr_0219at 233.303 kb on + strandat 233.365 kb on - strandat 233.365 kb on - strandat 233.365 kb on - strandat 233.365 kb on - strandat 233.416 kb on - strandat 233.547 kb on + strandat 233.602 kb on - strandat 233.733 kb on + strandat 233.734 kb on - strandat 233.734 kb on - strandat 233.734 kb on - strandat 234.045 kb on + strandat 234.046 kb on - strandat 234.092 kb on + strandat 234.092 kb on + strandat 234.092 kb on + strandat 234.092 kb on + strandat 234.093 kb on - strandat 234.093 kb on - strandat 234.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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231,043 - +0.3
231,065 + -0.2
231,066 - -1.7
231,109 - +0.9
231,109 - -1.5
231,920 - +0.3
232,291 - Psyr_0219 0.20 -2.2
232,291 - Psyr_0219 0.20 -3.2
232,370 + Psyr_0219 0.26 -0.3
232,370 + Psyr_0219 0.26 -2.0
232,370 + Psyr_0219 0.26 -0.7
232,370 + Psyr_0219 0.26 -2.7
232,371 - Psyr_0219 0.26 -0.1
232,371 - Psyr_0219 0.26 -3.9
232,371 - Psyr_0219 0.26 -2.4
232,371 - Psyr_0219 0.26 -0.4
232,371 - Psyr_0219 0.26 +1.3
232,371 - Psyr_0219 0.26 +0.3
232,371 - Psyr_0219 0.26 -1.9
232,371 - Psyr_0219 0.26 -3.0
232,371 - Psyr_0219 0.26 -3.2
232,375 - Psyr_0219 0.26 -3.7
232,375 - Psyr_0219 0.26 -2.5
232,375 - Psyr_0219 0.26 -2.4
232,925 + Psyr_0219 0.66 -3.9
232,926 - Psyr_0219 0.66 -2.5
233,060 + Psyr_0219 0.75 -3.7
233,060 + Psyr_0219 0.75 -2.7
233,060 + Psyr_0219 0.75 -1.9
233,060 + Psyr_0219 0.75 -3.4
233,060 + Psyr_0219 0.75 -2.6
233,060 + Psyr_0219 0.75 -2.9
233,061 - Psyr_0219 0.75 -3.6
233,061 - Psyr_0219 0.75 -2.7
233,061 - Psyr_0219 0.75 -2.6
233,126 + Psyr_0219 0.80 -0.3
233,127 - Psyr_0219 0.80 -3.3
233,127 - Psyr_0219 0.80 -2.0
233,127 - Psyr_0219 0.80 -3.2
233,127 - Psyr_0219 0.80 -1.3
233,127 - Psyr_0219 0.80 -4.0
233,129 + Psyr_0219 0.80 -1.0
233,129 + Psyr_0219 0.80 -1.7
233,130 - Psyr_0219 0.80 -1.7
233,155 + Psyr_0219 0.82 -2.7
233,155 + Psyr_0219 0.82 -2.3
233,155 + Psyr_0219 0.82 -0.3
233,155 + Psyr_0219 0.82 -2.5
233,155 + Psyr_0219 0.82 +0.3
233,156 - Psyr_0219 0.82 -2.7
233,156 - Psyr_0219 0.82 -3.4
233,156 - Psyr_0219 0.82 -0.6
233,303 + -2.8
233,365 - -0.7
233,365 - -1.0
233,365 - -3.2
233,365 - -1.9
233,416 - -1.0
233,547 + -1.6
233,602 - -0.5
233,733 + -0.0
233,734 - +1.7
233,734 - -0.5
233,734 - +3.2
234,045 + -0.8
234,046 - +0.3
234,092 + +1.3
234,092 + +1.2
234,092 + +0.4
234,092 + -2.0
234,093 - -1.0
234,093 - -0.5
234,093 - +2.4

Or see this region's nucleotide sequence