Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0218 and Psyr_0219 are separated by 28 nucleotides
Psyr_0218: Psyr_0218 - N-acetylglutamate kinase, at 231,075 to 231,980
_0218
Psyr_0219: Psyr_0219 - phosphomannomutase, at 232,009 to 233,406
_0219
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 231.043 kb on - strand at 231.065 kb on + strand at 231.066 kb on - strand at 231.109 kb on - strand at 231.109 kb on - strand at 231.920 kb on - strand at 232.291 kb on - strand, within Psyr_0219 at 232.291 kb on - strand, within Psyr_0219 at 232.370 kb on + strand, within Psyr_0219 at 232.370 kb on + strand, within Psyr_0219 at 232.370 kb on + strand, within Psyr_0219 at 232.370 kb on + strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.371 kb on - strand, within Psyr_0219 at 232.375 kb on - strand, within Psyr_0219 at 232.375 kb on - strand, within Psyr_0219 at 232.375 kb on - strand, within Psyr_0219 at 232.925 kb on + strand, within Psyr_0219 at 232.926 kb on - strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.060 kb on + strand, within Psyr_0219 at 233.061 kb on - strand, within Psyr_0219 at 233.061 kb on - strand, within Psyr_0219 at 233.061 kb on - strand, within Psyr_0219 at 233.126 kb on + strand, within Psyr_0219 at 233.127 kb on - strand, within Psyr_0219 at 233.127 kb on - strand, within Psyr_0219 at 233.127 kb on - strand, within Psyr_0219 at 233.127 kb on - strand, within Psyr_0219 at 233.127 kb on - strand, within Psyr_0219 at 233.129 kb on + strand, within Psyr_0219 at 233.129 kb on + strand, within Psyr_0219 at 233.130 kb on - strand, within Psyr_0219 at 233.155 kb on + strand, within Psyr_0219 at 233.155 kb on + strand, within Psyr_0219 at 233.155 kb on + strand, within Psyr_0219 at 233.155 kb on + strand, within Psyr_0219 at 233.155 kb on + strand, within Psyr_0219 at 233.156 kb on - strand, within Psyr_0219 at 233.156 kb on - strand, within Psyr_0219 at 233.156 kb on - strand, within Psyr_0219 at 233.303 kb on + strand at 233.365 kb on - strand at 233.365 kb on - strand at 233.365 kb on - strand at 233.365 kb on - strand at 233.416 kb on - strand at 233.547 kb on + strand at 233.602 kb on - strand at 233.733 kb on + strand at 233.734 kb on - strand at 233.734 kb on - strand at 233.734 kb on - strand at 234.045 kb on + strand at 234.046 kb on - strand at 234.092 kb on + strand at 234.092 kb on + strand at 234.092 kb on + strand at 234.092 kb on + strand at 234.093 kb on - strand at 234.093 kb on - strand at 234.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 231,043 - +0.3 231,065 + -0.2 231,066 - -1.7 231,109 - +0.9 231,109 - -1.5 231,920 - +0.3 232,291 - Psyr_0219 0.20 -2.2 232,291 - Psyr_0219 0.20 -3.2 232,370 + Psyr_0219 0.26 -0.3 232,370 + Psyr_0219 0.26 -2.0 232,370 + Psyr_0219 0.26 -0.7 232,370 + Psyr_0219 0.26 -2.7 232,371 - Psyr_0219 0.26 -0.1 232,371 - Psyr_0219 0.26 -3.9 232,371 - Psyr_0219 0.26 -2.4 232,371 - Psyr_0219 0.26 -0.4 232,371 - Psyr_0219 0.26 +1.3 232,371 - Psyr_0219 0.26 +0.3 232,371 - Psyr_0219 0.26 -1.9 232,371 - Psyr_0219 0.26 -3.0 232,371 - Psyr_0219 0.26 -3.2 232,375 - Psyr_0219 0.26 -3.7 232,375 - Psyr_0219 0.26 -2.5 232,375 - Psyr_0219 0.26 -2.4 232,925 + Psyr_0219 0.66 -3.9 232,926 - Psyr_0219 0.66 -2.5 233,060 + Psyr_0219 0.75 -3.7 233,060 + Psyr_0219 0.75 -2.7 233,060 + Psyr_0219 0.75 -1.9 233,060 + Psyr_0219 0.75 -3.4 233,060 + Psyr_0219 0.75 -2.6 233,060 + Psyr_0219 0.75 -2.9 233,061 - Psyr_0219 0.75 -3.6 233,061 - Psyr_0219 0.75 -2.7 233,061 - Psyr_0219 0.75 -2.6 233,126 + Psyr_0219 0.80 -0.3 233,127 - Psyr_0219 0.80 -3.3 233,127 - Psyr_0219 0.80 -2.0 233,127 - Psyr_0219 0.80 -3.2 233,127 - Psyr_0219 0.80 -1.3 233,127 - Psyr_0219 0.80 -4.0 233,129 + Psyr_0219 0.80 -1.0 233,129 + Psyr_0219 0.80 -1.7 233,130 - Psyr_0219 0.80 -1.7 233,155 + Psyr_0219 0.82 -2.7 233,155 + Psyr_0219 0.82 -2.3 233,155 + Psyr_0219 0.82 -0.3 233,155 + Psyr_0219 0.82 -2.5 233,155 + Psyr_0219 0.82 +0.3 233,156 - Psyr_0219 0.82 -2.7 233,156 - Psyr_0219 0.82 -3.4 233,156 - Psyr_0219 0.82 -0.6 233,303 + -2.8 233,365 - -0.7 233,365 - -1.0 233,365 - -3.2 233,365 - -1.9 233,416 - -1.0 233,547 + -1.6 233,602 - -0.5 233,733 + -0.0 233,734 - +1.7 233,734 - -0.5 233,734 - +3.2 234,045 + -0.8 234,046 - +0.3 234,092 + +1.3 234,092 + +1.2 234,092 + +0.4 234,092 + -2.0 234,093 - -1.0 234,093 - -0.5 234,093 - +2.4
Or see this region's nucleotide sequence