Strain Fitness in Pantoea sp. MT58 around IAI47_21725

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
85,974	+		IAI47_21720	0.14	-0.2
85,974	+		IAI47_21720	0.14	+2.2
86,160	+		IAI47_21720	0.30	-1.2
86,160	+		IAI47_21720	0.30	-1.3
86,161	-		IAI47_21720	0.30	-1.0
86,226	+		IAI47_21720	0.36	+0.7
86,226	+		IAI47_21720	0.36	-1.2
86,226	+		IAI47_21720	0.36	-0.4
86,226	+		IAI47_21720	0.36	+1.8
86,227	-		IAI47_21720	0.36	+1.2
86,227	-		IAI47_21720	0.36	+0.3
86,227	-		IAI47_21720	0.36	+1.2
86,227	-		IAI47_21720	0.36	+1.7
86,227	-		IAI47_21720	0.36	-2.0
86,537	+		IAI47_21720	0.64	-1.1
86,537	+		IAI47_21720	0.64	-1.1
86,538	-		IAI47_21720	0.64	+1.6
86,538	-		IAI47_21720	0.64	-1.1
86,654	+		IAI47_21720	0.74	-2.4
86,654	+		IAI47_21720	0.74	+1.3
86,655	-		IAI47_21720	0.74	-0.7
86,817	-		IAI47_21720	0.88	+0.3
86,832	+		IAI47_21720	0.90	+2.1
86,853	-				+1.3
86,853	-				-0.1
86,853	-				-1.8
86,898	+				+3.7
86,899	-				+0.3
86,899	-				+0.4
86,901	+				-0.9
86,901	+				+2.8
86,901	+				+0.8
86,901	+				-2.0
86,901	+				-0.8
86,902	-				-1.5
86,967	-				+0.1
86,967	-				+0.5
86,967	-				+1.3
87,040	+				-1.4
87,040	+				-2.2
87,040	+				-1.8
87,040	+				-1.1
87,041	-				-2.2
87,048	+				-2.5
87,048	+				-1.8
87,048	+				-1.5
87,048	+				-2.3
87,048	+				-0.1
87,048	+				-1.5
87,048	+				-0.3
87,048	+				-1.2
87,048	+				+1.3
87,049	-				-1.9
87,049	-				+0.9
87,049	-				+1.3
87,049	-				+1.3
87,049	-				+0.1
87,049	-				+2.3
87,049	-				+0.3
87,083	+				-0.2
87,137	+				+2.1
87,137	+				-1.2
87,137	+				+1.2
87,137	+				+0.5
87,137	+				+3.2
87,137	+				+0.1
87,137	+				+2.5
87,138	-				-0.1
87,138	-				-1.0
87,138	-				+0.6
87,138	-				+0.7
87,138	-				+1.3
87,138	-				+1.3
87,160	+				+0.6
87,160	+				+0.7
87,161	-				+0.0
87,161	-				-0.4
87,161	-				-0.7
87,175	+				+0.9
87,175	+				+0.7
87,175	+				+0.1
87,175	+				+1.4
87,235	+				-1.4
87,235	+				-1.7
87,235	+				+1.6
87,235	+				-1.1
87,235	+				+1.2
87,235	+				+1.2
87,235	+				-1.6
87,235	+				-1.8
87,235	+				+2.2
87,236	-				+0.1
87,236	-				+0.9
87,236	-				+0.3
87,236	-				+0.7
87,236	-				-2.1
87,236	-				-0.4
87,236	-				+1.4
87,236	-				+1.0
87,236	-				+0.8
87,236	-				-1.2
87,236	-				-2.9
87,236	-				+1.5
87,236	-				+0.8
87,236	-				+0.8
87,236	-				-0.6
87,236	-				+1.3
87,237	+				+0.3
87,237	+				+0.3
87,237	+				-1.7
87,237	+				+0.8
87,237	+				-1.7
87,237	+				-1.5
87,237	+				+0.6
87,237	+				-1.5
87,237	+				-2.8
87,237	+				-1.8
87,237	+				+1.5
87,237	+				-1.1
87,237	+				-1.9
87,237	+				+2.4
87,237	+				+1.6
87,237	+				+1.2
87,238	-				+2.4
87,238	-				-0.1
87,238	-				+0.6
87,238	-				-0.2
87,238	-				+0.3
87,238	-				-0.9
87,238	-				+0.9
87,238	-				-1.9
87,238	-				-0.4
87,238	-				-0.9
87,238	-				-0.4
87,238	-				+1.2
87,238	-				-0.4
87,238	-				+0.3
87,238	-				-0.9
87,238	-				-1.4
87,238	-				+0.5
87,238	-				-1.5
87,238	-				+2.5
87,238	-				+3.5
87,238	-				-0.1
87,238	-				-0.7
87,238	-				+0.2
87,238	-				+1.2
87,238	-				-0.1
87,238	-				+0.9
87,238	-				+0.6
87,238	-				-0.3
87,238	-				+1.4
87,238	-				-1.5
87,288	+		IAI47_21725	0.11	-1.8
87,296	-		IAI47_21725	0.11	+1.2
87,299	+		IAI47_21725	0.12	+1.6
87,299	+		IAI47_21725	0.12	+0.9
87,300	-		IAI47_21725	0.12	+0.9
87,300	-		IAI47_21725	0.12	+0.3
87,300	-		IAI47_21725	0.12	+0.7
87,390	+		IAI47_21725	0.15	-1.9
87,390	+		IAI47_21725	0.15	-0.8
87,391	-		IAI47_21725	0.15	-0.2
87,391	-		IAI47_21725	0.15	+3.6
87,398	+		IAI47_21725	0.15	+0.3
87,399	-		IAI47_21725	0.15	+1.1
87,413	+		IAI47_21725	0.15	+0.4
87,545	-		IAI47_21725	0.20	-0.4
87,545	-		IAI47_21725	0.20	+2.7
87,566	-		IAI47_21725	0.20	+0.9
87,695	+		IAI47_21725	0.25	+0.9
87,696	-		IAI47_21725	0.25	-2.9
87,696	-		IAI47_21725	0.25	-0.5
87,696	-		IAI47_21725	0.25	+0.9
87,741	-		IAI47_21725	0.26	+0.9
87,864	-		IAI47_21725	0.30	-1.1
87,864	-		IAI47_21725	0.30	+1.9
87,973	+		IAI47_21725	0.34	-0.7
88,001	-		IAI47_21725	0.35	+1.4
88,217	+		IAI47_21725	0.42	+0.3
88,217	+		IAI47_21725	0.42	+1.9
88,217	+		IAI47_21725	0.42	-0.8
88,217	+		IAI47_21725	0.42	+0.5
88,218	-		IAI47_21725	0.42	-1.4
88,218	-		IAI47_21725	0.42	+3.9
88,218	-		IAI47_21725	0.42	+0.9
88,236	+		IAI47_21725	0.42	+0.3
88,236	+		IAI47_21725	0.42	-0.2
88,236	+		IAI47_21725	0.42	-0.7
88,237	-		IAI47_21725	0.42	-0.4
88,237	-		IAI47_21725	0.42	-0.9
88,237	-		IAI47_21725	0.42	-2.0
88,298	+		IAI47_21725	0.44	+2.3
88,299	-		IAI47_21725	0.44	+0.6
88,299	-		IAI47_21725	0.44	+3.9
88,335	+		IAI47_21725	0.46	-0.8
88,335	+		IAI47_21725	0.46	-0.2
88,335	+		IAI47_21725	0.46	+1.7
88,335	+		IAI47_21725	0.46	+0.3
88,336	-		IAI47_21725	0.46	+0.1
88,336	-		IAI47_21725	0.46	+2.4
88,341	+		IAI47_21725	0.46	+2.8
88,341	+		IAI47_21725	0.46	-2.2
88,341	+		IAI47_21725	0.46	+0.5
88,342	-		IAI47_21725	0.46	+0.3
88,342	-		IAI47_21725	0.46	+0.5
88,342	-		IAI47_21725	0.46	+0.1
88,396	+		IAI47_21725	0.48	-1.1
88,397	-		IAI47_21725	0.48	+0.9
88,444	+		IAI47_21725	0.49	-1.7
88,444	+		IAI47_21725	0.49	-1.1
88,444	+		IAI47_21725	0.49	-2.0
88,444	+		IAI47_21725	0.49	-0.7
88,444	+		IAI47_21725	0.49	+1.3
88,444	+		IAI47_21725	0.49	+1.0
88,444	+		IAI47_21725	0.49	+0.8
88,445	-		IAI47_21725	0.49	+0.9
88,445	-		IAI47_21725	0.49	-1.7
88,445	-		IAI47_21725	0.49	-2.2
88,445	-		IAI47_21725	0.49	-0.8
88,445	-		IAI47_21725	0.49	-0.4
88,445	-		IAI47_21725	0.49	+0.1
88,482	+		IAI47_21725	0.50	-0.2
88,482	+		IAI47_21725	0.50	-1.1
88,482	+		IAI47_21725	0.50	-1.1
88,483	-		IAI47_21725	0.50	-0.0
88,483	-		IAI47_21725	0.50	+1.3
88,483	-		IAI47_21725	0.50	+0.3
88,483	-		IAI47_21725	0.50	+2.9
88,483	-		IAI47_21725	0.50	-0.7
88,511	+		IAI47_21725	0.51	+2.6
88,553	-		IAI47_21725	0.53	+2.2
88,553	-		IAI47_21725	0.53	-0.4
88,553	-		IAI47_21725	0.53	+0.0
88,563	+		IAI47_21725	0.53	-0.7
88,564	-		IAI47_21725	0.53	-1.7
88,564	-		IAI47_21725	0.53	+3.2
88,564	-		IAI47_21725	0.53	+0.8
88,564	-		IAI47_21725	0.53	-0.1
88,577	+		IAI47_21725	0.54	+0.6
88,578	-		IAI47_21725	0.54	+1.1
88,673	+		IAI47_21725	0.57	+0.3
88,673	+		IAI47_21725	0.57	+3.6
88,679	-		IAI47_21725	0.57	+1.1
88,731	+		IAI47_21725	0.59	-0.9
88,731	+		IAI47_21725	0.59	+2.4
88,731	+		IAI47_21725	0.59	+2.8
88,731	+		IAI47_21725	0.59	+0.9
88,732	-		IAI47_21725	0.59	+0.5
88,732	-		IAI47_21725	0.59	-1.7
88,732	-		IAI47_21725	0.59	-3.7
88,732	-		IAI47_21725	0.59	+1.2
88,732	-		IAI47_21725	0.59	-2.2
88,758	+		IAI47_21725	0.60	+0.3
88,758	+		IAI47_21725	0.60	+1.7
88,758	+		IAI47_21725	0.60	+0.2
88,758	+		IAI47_21725	0.60	+0.9
88,758	+		IAI47_21725	0.60	+0.1
88,759	-		IAI47_21725	0.60	+1.1
88,759	-		IAI47_21725	0.60	+1.4
88,759	-		IAI47_21725	0.60	-0.4
88,759	-		IAI47_21725	0.60	+0.7
88,762	+		IAI47_21725	0.60	-0.4
88,763	-		IAI47_21725	0.60	-0.4
88,763	-		IAI47_21725	0.60	+2.1
88,886	+		IAI47_21725	0.64	+1.0
88,887	-		IAI47_21725	0.64	-0.7
88,945	-		IAI47_21725	0.66	+0.5
88,945	-		IAI47_21725	0.66	+1.6
88,945	-		IAI47_21725	0.66	-0.1
89,080	+		IAI47_21725	0.70	-1.4
89,080	+		IAI47_21725	0.70	-2.2
89,126	-		IAI47_21725	0.72	+2.3
89,141	+		IAI47_21725	0.72	+2.9
89,141	+		IAI47_21725	0.72	-1.4
89,142	-		IAI47_21725	0.72	-0.7
89,261	+		IAI47_21725	0.76	-0.2
89,261	+		IAI47_21725	0.76	+0.8
89,262	-		IAI47_21725	0.76	+0.5
89,262	-		IAI47_21725	0.76	-0.1
89,358	+		IAI47_21725	0.79	-0.1
89,358	+		IAI47_21725	0.79	+1.6
89,358	+		IAI47_21725	0.79	-0.2
89,358	+		IAI47_21725	0.79	+0.3
89,358	+		IAI47_21725	0.79	+1.3
89,358	+		IAI47_21725	0.79	-0.4
89,359	-		IAI47_21725	0.79	-0.4
89,359	-		IAI47_21725	0.79	+1.0
89,359	-		IAI47_21725	0.79	+0.1
89,359	-		IAI47_21725	0.79	+1.6
89,368	+		IAI47_21725	0.80	-1.4
89,368	+		IAI47_21725	0.80	-2.9
89,368	+		IAI47_21725	0.80	+3.5
89,368	+		IAI47_21725	0.80	-0.7
89,368	+		IAI47_21725	0.80	-0.9
89,369	-		IAI47_21725	0.80	+2.7
89,369	-		IAI47_21725	0.80	-0.7
89,468	+		IAI47_21725	0.83	+4.1
89,468	+		IAI47_21725	0.83	-1.8
89,468	+		IAI47_21725	0.83	-0.7
89,468	+		IAI47_21725	0.83	-0.9
89,469	-		IAI47_21725	0.83	-1.1
89,469	-		IAI47_21725	0.83	+0.3
89,469	-		IAI47_21725	0.83	+1.5
89,469	-		IAI47_21725	0.83	+4.5
89,638	+		IAI47_21725	0.88	-0.2
89,639	-		IAI47_21725	0.88	-1.2
89,639	-		IAI47_21725	0.88	-1.2
89,639	-		IAI47_21725	0.88	+1.2
89,660	+		IAI47_21725	0.89	-2.5
89,693	+				+2.0
89,694	-				-1.7
89,732	+				+0.2
89,732	+				-2.0
89,732	+				+1.2
89,732	+				-1.9
89,733	-				+1.0
89,733	-				-0.7
89,750	+				-0.9
89,786	+				-1.2
89,861	+				-1.5
89,862	-				+1.3
89,862	-				+0.0
89,904	-				-0.1
89,925	-				+1.1
89,939	+				-1.2
89,939	+				-2.0
89,939	+				-1.9
89,939	+				-1.9
89,939	+				-0.4
89,939	+				+2.3
89,939	+				-0.0
89,940	-				+1.5
89,940	-				-1.6
89,940	-				+1.7
89,940	-				-2.7
89,940	-				-0.7
89,940	-				+2.0
89,944	+				+0.3
89,960	-				+0.5
89,988	+				-1.7
89,989	-				-0.4
90,108	+		IAI47_21730	0.24	+1.2
90,108	+		IAI47_21730	0.24	-0.6
90,108	+		IAI47_21730	0.24	-2.0
90,108	+		IAI47_21730	0.24	+1.9
90,109	-		IAI47_21730	0.24	+1.7
90,109	-		IAI47_21730	0.24	-2.6
90,153	+		IAI47_21730	0.42	+1.2
90,154	-		IAI47_21730	0.42	+1.2
90,154	-		IAI47_21730	0.42	+0.8
90,154	-		IAI47_21730	0.42	+0.3
90,159	+		IAI47_21730	0.44	-0.1
90,159	+		IAI47_21730	0.44	-1.4
90,159	+		IAI47_21730	0.44	-1.2
90,159	+		IAI47_21730	0.44	-2.5
90,159	+		IAI47_21730	0.44	-0.4
90,160	-		IAI47_21730	0.45	-1.0
90,160	-		IAI47_21730	0.45	-1.1
90,160	-		IAI47_21730	0.45	+0.8
90,171	+		IAI47_21730	0.49	-1.2
90,172	-		IAI47_21730	0.50	-1.4
90,278	+				-0.1
90,278	+				+1.9
90,278	+				-2.2
90,279	-				+0.9
90,279	-				-2.0
90,285	+				+3.3
90,285	+				-2.1
90,286	-				+0.3
90,286	-				-1.2
90,286	-				+0.9
90,287	+				+1.1
90,287	+				+1.3
90,287	+				-2.1
90,287	+				-1.7
90,287	+				-2.1
90,287	+				-2.2
90,287	+				-1.2
90,287	+				-0.9
90,287	+				-2.2
90,287	+				-0.3
90,287	+				-1.7
90,288	-				+1.7
90,288	-				+0.2
90,288	-				-0.1
90,288	-				-1.5
90,288	-				+0.1
90,288	-				-0.4
90,288	-				-0.4
90,288	-				-0.1
90,288	-				+1.5
90,288	-				-1.1
90,288	-				-0.7
90,288	-				+0.4
90,288	-				+2.6
90,288	-				+1.2
90,288	-				-0.2
90,288	-				-0.5
90,288	-				-2.1
90,288	-				-0.1
90,288	-				-0.1
90,288	-				+2.3
90,288	-				-2.2
90,288	-				-0.4
90,288	-				+1.9
90,289	+				+0.9
90,289	+				-1.5
90,289	+				-0.4
90,289	+				-0.7
90,289	+				+2.4
90,289	+				+1.5
90,289	+				+0.3
90,289	+				+0.6
90,289	+				+1.9
90,290	-				+0.9
90,290	-				+0.1
90,290	-				+0.6
90,290	-				-1.5
90,290	-				-0.5
90,290	-				+0.4
90,290	-				+1.9
90,290	-				-0.8
90,290	-				+0.6
90,290	-				+0.3
90,290	-				+0.9
90,290	-				+0.0
90,305	-				+1.2
90,337	+				-1.1
90,338	-				-1.9
90,350	-				+1.9
90,350	-				-0.4
90,354	+				+0.9
90,354	+				-1.2
90,354	+				+0.3
90,354	+				-2.1
90,354	+				-2.9
90,354	+				+0.0
90,354	+				-2.2
90,354	+				+2.5
90,355	-				+0.5
90,355	-				-0.3
90,355	-				-1.5
90,380	+				-1.7
90,380	+				-1.9
90,380	+				-0.5
90,381	-				+2.2
90,381	-				+0.6
90,574	-		IAI47_21735	0.22	-1.0
90,659	+		IAI47_21735	0.31	-1.1
90,659	+		IAI47_21735	0.31	+0.3
90,660	-		IAI47_21735	0.31	+1.4
90,660	-		IAI47_21735	0.31	-2.5
90,660	-		IAI47_21735	0.31	+1.0
90,660	-		IAI47_21735	0.31	+1.1
90,660	-		IAI47_21735	0.31	-0.9
90,735	+		IAI47_21735	0.40	+1.4
90,736	-		IAI47_21735	0.40	+0.1
90,742	+		IAI47_21735	0.41	+1.6
90,743	-		IAI47_21735	0.41	-0.2
90,851	-		IAI47_21735	0.53	+1.0
90,862	+		IAI47_21735	0.54	-2.0
90,862	+		IAI47_21735	0.54	-0.4
90,862	+		IAI47_21735	0.54	-0.2
90,862	+		IAI47_21735	0.54	-1.4
90,885	+		IAI47_21735	0.57	+0.8
90,885	+		IAI47_21735	0.57	-0.7
90,885	+		IAI47_21735	0.57	+0.8
90,885	+		IAI47_21735	0.57	-1.7
90,885	+		IAI47_21735	0.57	+0.0
90,885	+		IAI47_21735	0.57	+1.2
90,885	+		IAI47_21735	0.57	+0.3
90,886	-		IAI47_21735	0.57	-0.9
90,920	+		IAI47_21735	0.61	-0.4
90,931	-		IAI47_21735	0.62	+1.9
90,936	+		IAI47_21735	0.62	-0.9
90,937	-		IAI47_21735	0.62	-1.8
90,937	-		IAI47_21735	0.62	-1.0
90,937	-		IAI47_21735	0.62	-1.5
90,937	-		IAI47_21735	0.62	-2.4
90,963	+		IAI47_21735	0.65	-0.9
90,963	+		IAI47_21735	0.65	+3.8
90,964	-		IAI47_21735	0.65	+0.1