Strain Fitness in Pantoea sp. MT58 around IAI47_18335

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,901,811	-		IAI47_18330	0.37	-1.1
3,901,811	-		IAI47_18330	0.37	-1.3
3,901,811	-		IAI47_18330	0.37	+0.9
3,901,815	+		IAI47_18330	0.37	+0.1
3,901,815	+		IAI47_18330	0.37	+1.3
3,901,815	+		IAI47_18330	0.37	+0.7
3,901,816	-		IAI47_18330	0.37	-0.1
3,901,825	+		IAI47_18330	0.38	-0.7
3,901,853	-		IAI47_18330	0.40	-0.2
3,901,886	+		IAI47_18330	0.43	-0.6
3,901,886	+		IAI47_18330	0.43	+2.6
3,901,886	+		IAI47_18330	0.43	-0.6
3,901,886	+		IAI47_18330	0.43	+0.5
3,901,886	+		IAI47_18330	0.43	-1.8
3,901,886	+		IAI47_18330	0.43	+1.3
3,901,886	+		IAI47_18330	0.43	-0.5
3,901,886	+		IAI47_18330	0.43	-2.1
3,901,886	+		IAI47_18330	0.43	+0.2
3,901,887	-		IAI47_18330	0.43	+0.9
3,901,887	-		IAI47_18330	0.43	+0.7
3,901,887	-		IAI47_18330	0.43	-2.0
3,901,887	-		IAI47_18330	0.43	-0.0
3,901,887	-		IAI47_18330	0.43	-2.0
3,901,887	-		IAI47_18330	0.43	-1.3
3,901,887	-		IAI47_18330	0.43	-2.2
3,901,912	+		IAI47_18330	0.44	+0.3
3,901,912	+		IAI47_18330	0.44	+0.3
3,901,913	-		IAI47_18330	0.45	-1.3
3,901,913	-		IAI47_18330	0.45	+1.7
3,901,982	+		IAI47_18330	0.50	+0.0
3,901,995	-		IAI47_18330	0.51	-1.5
3,902,006	+		IAI47_18330	0.51	-0.6
3,902,006	+		IAI47_18330	0.51	-0.2
3,902,006	+		IAI47_18330	0.51	-0.7
3,902,006	+		IAI47_18330	0.51	-1.0
3,902,006	+		IAI47_18330	0.51	-1.3
3,902,006	+		IAI47_18330	0.51	-0.3
3,902,007	-		IAI47_18330	0.52	-2.7
3,902,057	+		IAI47_18330	0.55	-2.3
3,902,057	+		IAI47_18330	0.55	+2.2
3,902,057	+		IAI47_18330	0.55	+0.8
3,902,057	+		IAI47_18330	0.55	+0.1
3,902,057	+		IAI47_18330	0.55	+0.9
3,902,058	-		IAI47_18330	0.55	-1.6
3,902,058	-		IAI47_18330	0.55	-0.0
3,902,058	-		IAI47_18330	0.55	-2.3
3,902,058	-		IAI47_18330	0.55	-0.6
3,902,058	-		IAI47_18330	0.55	+0.8
3,902,058	-		IAI47_18330	0.55	-0.0
3,902,058	-		IAI47_18330	0.55	-2.0
3,902,058	-		IAI47_18330	0.55	-1.8
3,902,058	-		IAI47_18330	0.55	+0.2
3,902,058	-		IAI47_18330	0.55	-0.3
3,902,058	-		IAI47_18330	0.55	-2.0
3,902,084	+		IAI47_18330	0.57	-0.3
3,902,084	+		IAI47_18330	0.57	-1.4
3,902,084	+		IAI47_18330	0.57	+1.9
3,902,084	+		IAI47_18330	0.57	+2.8
3,902,084	+		IAI47_18330	0.57	-0.3
3,902,084	+		IAI47_18330	0.57	+0.5
3,902,085	-		IAI47_18330	0.57	-2.7
3,902,111	+		IAI47_18330	0.59	-0.3
3,902,111	+		IAI47_18330	0.59	+2.1
3,902,111	+		IAI47_18330	0.59	-2.2
3,902,111	+		IAI47_18330	0.59	-1.7
3,902,150	+		IAI47_18330	0.62	-0.3
3,902,151	-		IAI47_18330	0.62	+1.7
3,902,151	-		IAI47_18330	0.62	+0.4
3,902,151	-		IAI47_18330	0.62	+0.7
3,902,163	+		IAI47_18330	0.63	-1.8
3,902,164	-		IAI47_18330	0.63	-2.2
3,902,182	+		IAI47_18330	0.65	-2.1
3,902,183	-		IAI47_18330	0.65	+1.2
3,902,198	+		IAI47_18330	0.66	-0.2
3,902,199	-		IAI47_18330	0.66	-1.6
3,902,199	-		IAI47_18330	0.66	+0.4
3,902,207	+		IAI47_18330	0.66	+0.7
3,902,207	+		IAI47_18330	0.66	-0.7
3,902,207	+		IAI47_18330	0.66	-0.5
3,902,207	+		IAI47_18330	0.66	+1.4
3,902,207	+		IAI47_18330	0.66	-1.7
3,902,207	+		IAI47_18330	0.66	-0.6
3,902,207	+		IAI47_18330	0.66	-2.8
3,902,207	+		IAI47_18330	0.66	+0.3
3,902,207	+		IAI47_18330	0.66	-1.2
3,902,207	+		IAI47_18330	0.66	-0.1
3,902,207	+		IAI47_18330	0.66	+2.2
3,902,207	+		IAI47_18330	0.66	+0.4
3,902,207	+		IAI47_18330	0.66	-0.1
3,902,207	+		IAI47_18330	0.66	-2.2
3,902,207	+		IAI47_18330	0.66	-0.4
3,902,207	+		IAI47_18330	0.66	+1.3
3,902,208	-		IAI47_18330	0.67	-0.3
3,902,208	-		IAI47_18330	0.67	-2.6
3,902,208	-		IAI47_18330	0.67	-0.6
3,902,208	-		IAI47_18330	0.67	+1.3
3,902,208	-		IAI47_18330	0.67	+1.5
3,902,208	-		IAI47_18330	0.67	+0.9
3,902,208	-		IAI47_18330	0.67	+3.7
3,902,208	-		IAI47_18330	0.67	-1.9
3,902,208	-		IAI47_18330	0.67	-0.7
3,902,208	-		IAI47_18330	0.67	-1.9
3,902,208	-		IAI47_18330	0.67	-0.0
3,902,208	-		IAI47_18330	0.67	+0.4
3,902,208	-		IAI47_18330	0.67	+0.2
3,902,208	-		IAI47_18330	0.67	-1.8
3,902,208	-		IAI47_18330	0.67	+3.4
3,902,208	-		IAI47_18330	0.67	-1.8
3,902,213	+		IAI47_18330	0.67	+0.4
3,902,213	+		IAI47_18330	0.67	+1.0
3,902,214	-		IAI47_18330	0.67	+1.5
3,902,214	-		IAI47_18330	0.67	-0.5
3,902,299	+		IAI47_18330	0.73	-1.5
3,902,299	+		IAI47_18330	0.73	+1.1
3,902,299	+		IAI47_18330	0.73	-0.4
3,902,299	+		IAI47_18330	0.73	+1.1
3,902,299	+		IAI47_18330	0.73	-2.6
3,902,299	+		IAI47_18330	0.73	+1.7
3,902,300	-		IAI47_18330	0.73	+1.4
3,902,300	-		IAI47_18330	0.73	-1.2
3,902,300	-		IAI47_18330	0.73	-0.3
3,902,330	+		IAI47_18330	0.76	-0.3
3,902,330	+		IAI47_18330	0.76	-0.3
3,902,330	+		IAI47_18330	0.76	-1.8
3,902,330	+		IAI47_18330	0.76	-2.4
3,902,330	+		IAI47_18330	0.76	+0.7
3,902,330	+		IAI47_18330	0.76	-0.9
3,902,331	-		IAI47_18330	0.76	-0.2
3,902,331	-		IAI47_18330	0.76	-0.7
3,902,331	-		IAI47_18330	0.76	+1.3
3,902,331	-		IAI47_18330	0.76	-0.8
3,902,331	-		IAI47_18330	0.76	+0.4
3,902,331	-		IAI47_18330	0.76	-1.3
3,902,350	+		IAI47_18330	0.77	+0.9
3,902,399	+		IAI47_18330	0.81	-0.2
3,902,399	+		IAI47_18330	0.81	-0.7
3,902,400	-		IAI47_18330	0.81	-2.2
3,902,400	-		IAI47_18330	0.81	-0.6
3,902,531	+				-0.6
3,902,531	+				-0.7
3,902,531	+				-1.5
3,902,544	-				+0.1
3,902,611	-				+1.9
3,902,664	-				+1.0
3,902,707	+				-2.6
3,902,708	-				-2.2
3,902,708	-				+0.9
3,902,716	+				+1.5
3,902,716	+				-0.5
3,902,716	+				+2.0
3,902,716	+				+0.7
3,902,717	-				+1.0
3,902,717	-				-1.5
3,902,717	-				+0.6
3,902,717	-				-1.1
3,902,786	+		IAI47_18335	0.10	+0.1
3,902,786	+		IAI47_18335	0.10	-3.1
3,902,786	+		IAI47_18335	0.10	-0.8
3,902,786	+		IAI47_18335	0.10	-0.5
3,902,787	-		IAI47_18335	0.10	-1.9
3,902,787	-		IAI47_18335	0.10	+0.3
3,902,820	-		IAI47_18335	0.14	+2.0
3,902,820	-		IAI47_18335	0.14	+0.1
3,902,828	+		IAI47_18335	0.15	+1.8
3,902,837	+		IAI47_18335	0.16	-2.0
3,902,837	+		IAI47_18335	0.16	+0.6
3,902,837	+		IAI47_18335	0.16	+0.4
3,902,837	+		IAI47_18335	0.16	+2.4
3,902,895	-		IAI47_18335	0.24	-1.7
3,902,895	-		IAI47_18335	0.24	-0.1
3,902,895	-		IAI47_18335	0.24	+1.0
3,902,990	+		IAI47_18335	0.35	+1.3
3,903,080	+		IAI47_18335	0.47	-2.8
3,903,080	+		IAI47_18335	0.47	-4.2
3,903,080	+		IAI47_18335	0.47	+0.7
3,903,080	+		IAI47_18335	0.47	-0.5
3,903,081	-		IAI47_18335	0.47	+1.6
3,903,081	-		IAI47_18335	0.47	-0.5
3,903,081	-		IAI47_18335	0.47	+0.6
3,903,086	+		IAI47_18335	0.47	-0.6
3,903,087	-		IAI47_18335	0.48	+0.3
3,903,106	+		IAI47_18335	0.50	+3.6
3,903,106	+		IAI47_18335	0.50	+0.1
3,903,106	+		IAI47_18335	0.50	-0.9
3,903,107	-		IAI47_18335	0.50	+0.7
3,903,107	-		IAI47_18335	0.50	-0.7
3,903,107	-		IAI47_18335	0.50	+0.5
3,903,115	+		IAI47_18335	0.51	+4.4
3,903,115	+		IAI47_18335	0.51	+0.1
3,903,115	+		IAI47_18335	0.51	-2.1
3,903,115	+		IAI47_18335	0.51	-1.6
3,903,115	+		IAI47_18335	0.51	-0.5
3,903,116	-		IAI47_18335	0.51	+1.1
3,903,116	-		IAI47_18335	0.51	-1.0
3,903,116	-		IAI47_18335	0.51	+0.7
3,903,116	-		IAI47_18335	0.51	+0.1
3,903,139	+		IAI47_18335	0.54	-1.1
3,903,139	+		IAI47_18335	0.54	-0.7
3,903,139	+		IAI47_18335	0.54	-2.5
3,903,139	+		IAI47_18335	0.54	-0.0
3,903,140	-		IAI47_18335	0.54	+0.4
3,903,140	-		IAI47_18335	0.54	-2.1
3,903,140	-		IAI47_18335	0.54	-0.6
3,903,140	-		IAI47_18335	0.54	+0.3
3,903,207	-		IAI47_18335	0.63	-0.1
3,903,207	-		IAI47_18335	0.63	-1.1
3,903,220	+		IAI47_18335	0.64	-1.1
3,903,220	+		IAI47_18335	0.64	+0.0
3,903,220	+		IAI47_18335	0.64	-2.4
3,903,263	+		IAI47_18335	0.70	+2.4
3,903,264	-		IAI47_18335	0.70	+0.5
3,903,264	-		IAI47_18335	0.70	-2.0
3,903,323	+		IAI47_18335	0.77	-0.3
3,903,323	+		IAI47_18335	0.77	-0.5
3,903,323	+		IAI47_18335	0.77	-3.2
3,903,323	+		IAI47_18335	0.77	+3.4
3,903,323	+		IAI47_18335	0.77	+0.1
3,903,323	+		IAI47_18335	0.77	+0.5
3,903,323	+		IAI47_18335	0.77	-1.1
3,903,323	+		IAI47_18335	0.77	-1.7
3,903,323	+		IAI47_18335	0.77	+0.6
3,903,323	+		IAI47_18335	0.77	+2.1
3,903,324	-		IAI47_18335	0.77	-1.9
3,903,324	-		IAI47_18335	0.77	+0.9
3,903,324	-		IAI47_18335	0.77	-0.3
3,903,324	-		IAI47_18335	0.77	-2.6
3,903,324	-		IAI47_18335	0.77	-2.4
3,903,324	-		IAI47_18335	0.77	+0.7
3,903,324	-		IAI47_18335	0.77	-1.3
3,903,324	-		IAI47_18335	0.77	-0.4
3,903,324	-		IAI47_18335	0.77	+0.9
3,903,324	-		IAI47_18335	0.77	+0.1
3,903,324	-		IAI47_18335	0.77	-0.2
3,903,324	-		IAI47_18335	0.77	-1.9
3,903,325	+		IAI47_18335	0.77	-0.9
3,903,325	+		IAI47_18335	0.77	-2.8
3,903,325	+		IAI47_18335	0.77	-0.7
3,903,325	+		IAI47_18335	0.77	+1.0
3,903,325	+		IAI47_18335	0.77	-0.1
3,903,325	+		IAI47_18335	0.77	-0.4
3,903,325	+		IAI47_18335	0.77	-2.1
3,903,325	+		IAI47_18335	0.77	-0.1
3,903,325	+		IAI47_18335	0.77	-1.0
3,903,326	-		IAI47_18335	0.77	+0.8
3,903,326	-		IAI47_18335	0.77	+0.5
3,903,326	-		IAI47_18335	0.77	-0.3
3,903,326	-		IAI47_18335	0.77	+2.7
3,903,368	+		IAI47_18335	0.83	-0.0
3,903,368	+		IAI47_18335	0.83	-0.5
3,903,368	+		IAI47_18335	0.83	-2.7
3,903,368	+		IAI47_18335	0.83	-1.3
3,903,368	+		IAI47_18335	0.83	-0.7
3,903,368	+		IAI47_18335	0.83	-0.3
3,903,368	+		IAI47_18335	0.83	+1.3
3,903,368	+		IAI47_18335	0.83	-2.8
3,903,368	+		IAI47_18335	0.83	-0.6
3,903,368	+		IAI47_18335	0.83	+1.3
3,903,368	+		IAI47_18335	0.83	-0.1
3,903,368	+		IAI47_18335	0.83	+2.1
3,903,369	-		IAI47_18335	0.83	-0.5
3,903,369	-		IAI47_18335	0.83	+0.5
3,903,369	-		IAI47_18335	0.83	-1.1
3,903,369	-		IAI47_18335	0.83	-2.5
3,903,401	+		IAI47_18335	0.87	+0.1
3,903,402	-		IAI47_18335	0.87	-0.3
3,903,402	-		IAI47_18335	0.87	-2.4
3,903,402	-		IAI47_18335	0.87	-2.0
3,903,404	-		IAI47_18335	0.87	-1.5
3,903,502	+				+1.4
3,903,502	+				-0.2
3,903,502	+				+0.6
3,903,502	+				-2.7
3,903,502	+				+1.9
3,903,502	+				-0.5
3,903,502	+				-2.4
3,903,502	+				+1.4
3,903,502	+				+1.5
3,903,503	-				+0.7
3,903,503	-				+0.2
3,903,503	-				+0.1
3,903,503	-				-0.3
3,903,503	-				+1.2
3,903,519	+				+0.3
3,903,519	+				-1.6
3,903,665	+		IAI47_18340	0.11	+0.3
3,903,665	+		IAI47_18340	0.11	+0.4
3,903,665	+		IAI47_18340	0.11	-1.7
3,903,665	+		IAI47_18340	0.11	-1.2
3,903,666	-		IAI47_18340	0.11	+1.1
3,903,756	+		IAI47_18340	0.20	-1.1
3,903,756	+		IAI47_18340	0.20	+0.9
3,903,757	-		IAI47_18340	0.20	+0.2
3,903,757	-		IAI47_18340	0.20	+0.0
3,903,782	+		IAI47_18340	0.23	-1.2
3,903,783	-		IAI47_18340	0.23	-1.1
3,903,783	-		IAI47_18340	0.23	-0.9
3,903,798	-		IAI47_18340	0.24	-1.2
3,903,800	+		IAI47_18340	0.24	-1.6
3,903,800	+		IAI47_18340	0.24	-0.8
3,903,801	-		IAI47_18340	0.24	-1.6
3,903,801	-		IAI47_18340	0.24	+0.1
3,903,801	-		IAI47_18340	0.24	+1.1
3,903,801	-		IAI47_18340	0.24	-2.2
3,903,838	+		IAI47_18340	0.28	-0.2
3,903,838	+		IAI47_18340	0.28	+0.2
3,903,838	+		IAI47_18340	0.28	-1.2
3,903,838	+		IAI47_18340	0.28	-1.2
3,903,838	+		IAI47_18340	0.28	+0.0
3,903,838	+		IAI47_18340	0.28	-1.1
3,903,838	+		IAI47_18340	0.28	-0.5
3,903,838	+		IAI47_18340	0.28	-0.7
3,903,839	-		IAI47_18340	0.28	-0.9
3,903,839	-		IAI47_18340	0.28	+0.4
3,903,839	-		IAI47_18340	0.28	-0.5
3,903,839	-		IAI47_18340	0.28	+2.4
3,903,927	-		IAI47_18340	0.37	-1.6
3,903,970	+		IAI47_18340	0.41	-0.8
3,903,971	-		IAI47_18340	0.42	-2.0
3,904,117	-		IAI47_18340	0.56	+0.9
3,904,117	-		IAI47_18340	0.56	+0.1
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