Strain Fitness in Pantoea sp. MT58 around IAI47_17530

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,715,591	+				+2.1
3,715,592	-				+2.1
3,715,617	-				-0.7
3,715,662	+		IAI47_17525	0.14	-3.0
3,715,663	-		IAI47_17525	0.14	-2.7
3,715,663	-		IAI47_17525	0.14	-2.1
3,715,663	-		IAI47_17525	0.14	-0.2
3,715,663	-		IAI47_17525	0.14	-2.1
3,715,731	+		IAI47_17525	0.20	+0.5
3,715,795	+		IAI47_17525	0.26	-1.6
3,715,795	+		IAI47_17525	0.26	+1.9
3,715,795	+		IAI47_17525	0.26	-0.2
3,715,796	-		IAI47_17525	0.27	-1.7
3,715,796	-		IAI47_17525	0.27	-2.2
3,715,796	-		IAI47_17525	0.27	-0.3
3,715,796	-		IAI47_17525	0.27	-0.2
3,715,796	-		IAI47_17525	0.27	+0.5
3,715,821	+		IAI47_17525	0.29	+1.5
3,715,821	+		IAI47_17525	0.29	-0.3
3,715,821	+		IAI47_17525	0.29	+0.4
3,715,821	+		IAI47_17525	0.29	+1.1
3,715,822	-		IAI47_17525	0.29	+1.3
3,715,822	-		IAI47_17525	0.29	-1.4
3,715,822	-		IAI47_17525	0.29	-2.3
3,715,822	-		IAI47_17525	0.29	-1.9
3,715,822	-		IAI47_17525	0.29	-0.6
3,715,902	+		IAI47_17525	0.36	-0.1
3,715,902	+		IAI47_17525	0.36	+1.6
3,715,902	+		IAI47_17525	0.36	-1.8
3,715,902	+		IAI47_17525	0.36	-0.2
3,715,902	+		IAI47_17525	0.36	-1.1
3,715,902	+		IAI47_17525	0.36	-1.7
3,715,902	+		IAI47_17525	0.36	+1.7
3,715,903	-		IAI47_17525	0.37	+0.9
3,715,903	-		IAI47_17525	0.37	+0.1
3,715,903	-		IAI47_17525	0.37	-0.9
3,715,903	-		IAI47_17525	0.37	+0.6
3,715,903	-		IAI47_17525	0.37	+0.8
3,715,903	-		IAI47_17525	0.37	-1.2
3,715,903	-		IAI47_17525	0.37	+0.3
3,715,903	-		IAI47_17525	0.37	-0.1
3,715,903	-		IAI47_17525	0.37	-1.0
3,715,903	-		IAI47_17525	0.37	+2.5
3,715,903	-		IAI47_17525	0.37	-0.8
3,715,903	-		IAI47_17525	0.37	-0.5
3,715,932	+		IAI47_17525	0.39	+0.0
3,715,932	+		IAI47_17525	0.39	+0.2
3,715,933	-		IAI47_17525	0.39	-2.2
3,715,933	-		IAI47_17525	0.39	-1.4
3,715,933	-		IAI47_17525	0.39	+0.1
3,716,037	+		IAI47_17525	0.49	+0.9
3,716,038	-		IAI47_17525	0.49	-0.7
3,716,102	+		IAI47_17525	0.55	+1.1
3,716,115	+		IAI47_17525	0.56	+0.2
3,716,116	-		IAI47_17525	0.56	-0.5
3,716,116	-		IAI47_17525	0.56	-0.0
3,716,175	+		IAI47_17525	0.62	+0.9
3,716,175	+		IAI47_17525	0.62	-0.6
3,716,175	+		IAI47_17525	0.62	+0.5
3,716,175	+		IAI47_17525	0.62	-2.7
3,716,175	+		IAI47_17525	0.62	+0.3
3,716,175	+		IAI47_17525	0.62	-1.4
3,716,176	-		IAI47_17525	0.62	-0.2
3,716,176	-		IAI47_17525	0.62	-0.4
3,716,176	-		IAI47_17525	0.62	-3.0
3,716,176	-		IAI47_17525	0.62	-2.0
3,716,176	-		IAI47_17525	0.62	+0.7
3,716,176	-		IAI47_17525	0.62	+0.7
3,716,176	-		IAI47_17525	0.62	-0.7
3,716,176	-		IAI47_17525	0.62	-1.6
3,716,176	-		IAI47_17525	0.62	+1.8
3,716,180	+		IAI47_17525	0.62	+1.9
3,716,180	+		IAI47_17525	0.62	+0.1
3,716,180	+		IAI47_17525	0.62	-2.7
3,716,180	+		IAI47_17525	0.62	-0.7
3,716,180	+		IAI47_17525	0.62	-2.0
3,716,181	-		IAI47_17525	0.62	+2.4
3,716,181	-		IAI47_17525	0.62	-0.1
3,716,181	-		IAI47_17525	0.62	+2.1
3,716,181	-		IAI47_17525	0.62	+0.7
3,716,181	-		IAI47_17525	0.62	+0.0
3,716,181	-		IAI47_17525	0.62	+0.9
3,716,186	+		IAI47_17525	0.63	-1.0
3,716,186	+		IAI47_17525	0.63	-2.8
3,716,187	-		IAI47_17525	0.63	-1.2
3,716,187	-		IAI47_17525	0.63	+1.2
3,716,230	+		IAI47_17525	0.67	+1.3
3,716,230	+		IAI47_17525	0.67	+0.8
3,716,230	+		IAI47_17525	0.67	-2.2
3,716,230	+		IAI47_17525	0.67	-0.1
3,716,230	+		IAI47_17525	0.67	+2.9
3,716,230	+		IAI47_17525	0.67	+1.1
3,716,230	+		IAI47_17525	0.67	-0.1
3,716,231	-		IAI47_17525	0.67	+0.5
3,716,231	-		IAI47_17525	0.67	+1.4
3,716,231	-		IAI47_17525	0.67	+1.1
3,716,231	-		IAI47_17525	0.67	+0.1
3,716,231	-		IAI47_17525	0.67	+3.3
3,716,258	+		IAI47_17525	0.70	+0.8
3,716,318	+		IAI47_17525	0.75	+1.7
3,716,318	+		IAI47_17525	0.75	+0.5
3,716,318	+		IAI47_17525	0.75	+0.5
3,716,318	+		IAI47_17525	0.75	+2.1
3,716,318	+		IAI47_17525	0.75	+2.3
3,716,319	-		IAI47_17525	0.75	-3.3
3,716,319	-		IAI47_17525	0.75	+2.3
3,716,321	+		IAI47_17525	0.76	-1.0
3,716,321	+		IAI47_17525	0.76	-0.7
3,716,322	-		IAI47_17525	0.76	-1.7
3,716,322	-		IAI47_17525	0.76	+2.1
3,716,405	+		IAI47_17525	0.83	+1.1
3,716,406	-		IAI47_17525	0.83	-2.1
3,716,477	-				+2.2
3,716,477	-				-1.8
3,716,492	+				+0.9
3,716,492	+				+0.9
3,716,492	+				-1.0
3,716,493	-				-0.0
3,716,493	-				+2.1
3,716,493	-				-0.7
3,716,493	-				-0.7
3,716,580	+				-1.9
3,716,580	+				+0.1
3,716,722	+		IAI47_17530	0.10	-0.1
3,716,723	-		IAI47_17530	0.10	+1.6
3,716,759	+		IAI47_17530	0.13	+0.4
3,716,819	+		IAI47_17530	0.18	-0.9
3,716,819	+		IAI47_17530	0.18	+0.3
3,716,819	+		IAI47_17530	0.18	-2.4
3,716,819	+		IAI47_17530	0.18	-1.6
3,716,819	+		IAI47_17530	0.18	+2.1
3,716,819	+		IAI47_17530	0.18	+1.4
3,716,819	+		IAI47_17530	0.18	-0.7
3,716,820	-		IAI47_17530	0.18	+0.1
3,716,820	-		IAI47_17530	0.18	-0.1
3,716,820	-		IAI47_17530	0.18	+0.7
3,716,820	-		IAI47_17530	0.18	+0.2
3,716,820	-		IAI47_17530	0.18	-0.7
3,716,820	-		IAI47_17530	0.18	-1.6
3,716,820	-		IAI47_17530	0.18	-1.4
3,716,872	-		IAI47_17530	0.22	-2.3
3,716,884	+		IAI47_17530	0.23	+1.0
3,716,913	+		IAI47_17530	0.25	-1.8
3,716,914	-		IAI47_17530	0.25	-1.1
3,717,006	+		IAI47_17530	0.32	+0.1
3,717,006	+		IAI47_17530	0.32	-1.9
3,717,006	+		IAI47_17530	0.32	-0.7
3,717,006	+		IAI47_17530	0.32	-0.0
3,717,006	+		IAI47_17530	0.32	-0.6
3,717,006	+		IAI47_17530	0.32	+1.5
3,717,007	-		IAI47_17530	0.32	-0.7
3,717,007	-		IAI47_17530	0.32	+1.4
3,717,007	-		IAI47_17530	0.32	-0.7
3,717,007	-		IAI47_17530	0.32	-1.3
3,717,007	-		IAI47_17530	0.32	-2.4
3,717,007	-		IAI47_17530	0.32	-0.7
3,717,070	-		IAI47_17530	0.36	+1.3
3,717,212	+		IAI47_17530	0.47	-0.5
3,717,212	+		IAI47_17530	0.47	+1.6
3,717,212	+		IAI47_17530	0.47	+0.1
3,717,213	-		IAI47_17530	0.47	-0.4
3,717,213	-		IAI47_17530	0.47	-1.9
3,717,213	-		IAI47_17530	0.47	-0.0
3,717,213	-		IAI47_17530	0.47	+1.1
3,717,213	-		IAI47_17530	0.47	+0.1
3,717,213	-		IAI47_17530	0.47	+0.9
3,717,213	-		IAI47_17530	0.47	-0.2
3,717,240	+		IAI47_17530	0.49	-2.7
3,717,240	+		IAI47_17530	0.49	+1.4
3,717,240	+		IAI47_17530	0.49	-1.8
3,717,240	+		IAI47_17530	0.49	-0.6
3,717,241	-		IAI47_17530	0.49	+0.5
3,717,241	-		IAI47_17530	0.49	+0.3
3,717,288	+		IAI47_17530	0.53	+1.9
3,717,297	+		IAI47_17530	0.54	+0.7
3,717,297	+		IAI47_17530	0.54	+0.7
3,717,298	-		IAI47_17530	0.54	-1.8
3,717,298	-		IAI47_17530	0.54	-1.1
3,717,298	-		IAI47_17530	0.54	-3.8
3,717,320	+		IAI47_17530	0.55	-2.2
3,717,320	+		IAI47_17530	0.55	-1.7
3,717,320	+		IAI47_17530	0.55	-0.4
3,717,321	-		IAI47_17530	0.55	-2.1
3,717,321	-		IAI47_17530	0.55	-1.6
3,717,381	+		IAI47_17530	0.60	-2.3
3,717,381	+		IAI47_17530	0.60	+1.6
3,717,382	-		IAI47_17530	0.60	-0.8
3,717,414	+		IAI47_17530	0.62	-1.7
3,717,414	+		IAI47_17530	0.62	+1.0
3,717,472	-		IAI47_17530	0.67	-0.8
3,717,472	-		IAI47_17530	0.67	-0.8
3,717,514	-		IAI47_17530	0.70	+1.5
3,717,616	-		IAI47_17530	0.77	+0.6
3,717,621	+		IAI47_17530	0.78	+0.5
3,717,621	+		IAI47_17530	0.78	-0.0
3,717,622	-		IAI47_17530	0.78	-2.9
3,717,622	-		IAI47_17530	0.78	-1.6
3,717,622	-		IAI47_17530	0.78	+0.5
3,717,622	-		IAI47_17530	0.78	+0.6
3,717,641	+				+2.1
3,717,642	-		IAI47_17530	0.79	+0.2
3,717,695	+		IAI47_17530	0.83	-0.7
3,717,695	+		IAI47_17530	0.83	+1.0
3,717,786	-				+0.1
3,717,805	-				-1.6
3,717,805	-				-0.2
3,717,805	-				-4.0
3,717,991	+				-0.7
3,717,991	+				-1.2
3,717,992	-				-1.0
3,718,011	-				-0.0
3,718,020	+				+2.0
3,718,051	+				-1.1
3,718,052	-				-1.4
3,718,093	+				-1.4
3,718,093	+				+0.9
3,718,094	-				-1.1
3,718,237	+		IAI47_17535	0.27	-1.9
3,718,238	-		IAI47_17535	0.27	+0.3
3,718,238	-		IAI47_17535	0.27	+0.9
3,718,238	-		IAI47_17535	0.27	-0.2
3,718,340	+		IAI47_17535	0.39	-0.9
3,718,340	+		IAI47_17535	0.39	+0.1
3,718,340	+		IAI47_17535	0.39	+0.8
3,718,340	+		IAI47_17535	0.39	-1.1
3,718,341	-		IAI47_17535	0.39	+2.4
3,718,341	-		IAI47_17535	0.39	+1.5
3,718,341	-		IAI47_17535	0.39	-1.7
3,718,391	-		IAI47_17535	0.46	+0.5
3,718,434	+		IAI47_17535	0.51	+0.5
3,718,434	+		IAI47_17535	0.51	-1.4
3,718,434	+		IAI47_17535	0.51	-0.2
3,718,435	-		IAI47_17535	0.51	+2.1
3,718,435	-		IAI47_17535	0.51	+1.1
3,718,435	-		IAI47_17535	0.51	+0.1
3,718,435	-		IAI47_17535	0.51	+0.6
3,718,435	-		IAI47_17535	0.51	+1.5
3,718,435	-		IAI47_17535	0.51	+1.9
3,718,483	+		IAI47_17535	0.57	+1.9
3,718,483	+		IAI47_17535	0.57	+0.0
3,718,483	+		IAI47_17535	0.57	-1.8
3,718,483	+		IAI47_17535	0.57	+2.0
3,718,483	+		IAI47_17535	0.57	-1.4
3,718,484	-		IAI47_17535	0.57	-0.1
3,718,484	-		IAI47_17535	0.57	-2.7
3,718,583	-		IAI47_17535	0.69	+1.0
3,718,583	-		IAI47_17535	0.69	+0.6
3,718,604	+		IAI47_17535	0.72	+1.8
3,718,604	+		IAI47_17535	0.72	-2.5
3,718,605	-		IAI47_17535	0.72	-1.2
3,718,605	-		IAI47_17535	0.72	-0.3
3,718,605	-		IAI47_17535	0.72	+0.5
3,718,641	+		IAI47_17535	0.76	+3.4
3,718,641	+		IAI47_17535	0.76	+1.1
3,718,641	+		IAI47_17535	0.76	+0.6
3,718,642	-		IAI47_17535	0.76	-0.7
3,718,642	-		IAI47_17535	0.76	-2.0
3,718,642	-		IAI47_17535	0.76	-2.0
3,718,649	-		IAI47_17535	0.77	-1.5
3,718,649	-		IAI47_17535	0.77	-0.6
3,718,649	-		IAI47_17535	0.77	-1.6
3,718,678	-		IAI47_17535	0.81	+1.9
3,718,741	+		IAI47_17535	0.88	+0.1
3,718,741	+		IAI47_17535	0.88	-0.1
3,718,742	-		IAI47_17535	0.89	+1.3
3,718,742	-		IAI47_17535	0.89	+1.5
3,718,790	+				+0.9
3,718,791	-				-2.7
3,718,791	-				-2.4
3,718,838	+				+0.4
3,718,868	+				-1.8
3,718,868	+				+1.9
3,718,868	+				-0.3
3,718,868	+				-1.8
3,718,868	+				-1.4
3,718,869	-				-0.1
3,718,879	+				-1.9
3,718,887	+				-0.6
3,718,887	+				-0.2
3,718,887	+				+0.6