Strain Fitness in Pantoea sp. MT58 around IAI47_05240

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,106,725	-		IAI47_05230	0.78	-1.0
1,106,749	-		IAI47_05230	0.81	+0.6
1,106,749	-		IAI47_05230	0.81	+2.6
1,106,788	+		IAI47_05230	0.85	-0.4
1,106,788	+		IAI47_05230	0.85	+1.5
1,106,789	-		IAI47_05230	0.85	+0.8
1,106,807	-		IAI47_05230	0.87	+0.1
1,106,807	-		IAI47_05230	0.87	-1.2
1,106,807	-		IAI47_05230	0.87	-0.4
1,106,807	-		IAI47_05230	0.87	-1.2
1,106,807	-		IAI47_05230	0.87	-2.4
1,106,807	-		IAI47_05230	0.87	+0.8
1,106,807	-		IAI47_05230	0.87	+1.1
1,106,881	-				-2.3
1,106,972	+				+2.1
1,106,973	-				-2.1
1,106,973	-				+1.2
1,107,011	+		IAI47_05235	0.12	+0.3
1,107,011	+		IAI47_05235	0.12	+1.6
1,107,012	-		IAI47_05235	0.12	-1.4
1,107,021	+		IAI47_05235	0.13	+0.1
1,107,021	+		IAI47_05235	0.13	+0.1
1,107,021	+		IAI47_05235	0.13	-2.5
1,107,022	-		IAI47_05235	0.13	+1.9
1,107,081	+		IAI47_05235	0.21	+1.1
1,107,081	+		IAI47_05235	0.21	-0.1
1,107,081	+		IAI47_05235	0.21	+3.1
1,107,081	+		IAI47_05235	0.21	-0.6
1,107,081	+		IAI47_05235	0.21	-0.7
1,107,081	+		IAI47_05235	0.21	+1.3
1,107,081	+		IAI47_05235	0.21	+1.0
1,107,081	+		IAI47_05235	0.21	+2.9
1,107,082	-		IAI47_05235	0.21	+0.1
1,107,082	-		IAI47_05235	0.21	+0.5
1,107,082	-		IAI47_05235	0.21	+2.1
1,107,082	-		IAI47_05235	0.21	-0.7
1,107,082	-		IAI47_05235	0.21	+0.7
1,107,082	-		IAI47_05235	0.21	+2.5
1,107,106	+		IAI47_05235	0.24	+2.5
1,107,107	-		IAI47_05235	0.24	-0.2
1,107,107	-		IAI47_05235	0.24	+1.9
1,107,107	-		IAI47_05235	0.24	+0.3
1,107,151	+		IAI47_05235	0.29	+0.2
1,107,169	+		IAI47_05235	0.31	-0.2
1,107,169	+		IAI47_05235	0.31	+0.6
1,107,170	-		IAI47_05235	0.31	-1.5
1,107,200	+		IAI47_05235	0.35	-2.1
1,107,309	-		IAI47_05235	0.49	-1.7
1,107,332	+		IAI47_05235	0.51	+1.0
1,107,333	-		IAI47_05235	0.51	+1.2
1,107,333	-		IAI47_05235	0.51	-1.6
1,107,333	-		IAI47_05235	0.51	+0.7
1,107,333	-		IAI47_05235	0.51	+0.1
1,107,373	-		IAI47_05235	0.56	-2.3
1,107,491	+		IAI47_05235	0.71	+1.1
1,107,491	+		IAI47_05235	0.71	-0.5
1,107,491	+		IAI47_05235	0.71	+0.2
1,107,491	+		IAI47_05235	0.71	+0.8
1,107,491	+		IAI47_05235	0.71	+0.4
1,107,492	-		IAI47_05235	0.71	-1.7
1,107,492	-		IAI47_05235	0.71	+0.5
1,107,492	-		IAI47_05235	0.71	+1.1
1,107,500	+		IAI47_05235	0.72	+2.1
1,107,500	+		IAI47_05235	0.72	-1.6
1,107,501	-		IAI47_05235	0.72	+2.8
1,107,527	+		IAI47_05235	0.75	-3.2
1,107,527	+		IAI47_05235	0.75	-1.9
1,107,527	+		IAI47_05235	0.75	-2.3
1,107,528	-		IAI47_05235	0.75	+0.2
1,107,528	-		IAI47_05235	0.75	+0.6
1,107,528	-		IAI47_05235	0.75	-0.3
1,107,528	-		IAI47_05235	0.75	+0.3
1,107,528	-		IAI47_05235	0.75	+1.3
1,107,585	+		IAI47_05235	0.82	+0.4
1,107,585	+		IAI47_05235	0.82	+1.7
1,107,585	+		IAI47_05235	0.82	+0.1
1,107,585	+		IAI47_05235	0.82	-0.4
1,107,585	+		IAI47_05235	0.82	-0.5
1,107,585	+		IAI47_05235	0.82	-0.7
1,107,585	+		IAI47_05235	0.82	-2.3
1,107,586	-		IAI47_05235	0.82	-1.2
1,107,586	-		IAI47_05235	0.82	+1.8
1,107,586	-		IAI47_05235	0.82	+0.7
1,107,586	-		IAI47_05235	0.82	-2.2
1,107,586	-		IAI47_05235	0.82	-1.5
1,107,586	-		IAI47_05235	0.82	+1.1
1,107,586	-		IAI47_05235	0.82	+0.1
1,107,632	+		IAI47_05235	0.88	+2.3
1,107,632	+		IAI47_05235	0.88	-1.3
1,107,633	-		IAI47_05235	0.88	-0.1
1,107,633	-		IAI47_05235	0.88	-1.6
1,107,633	-		IAI47_05235	0.88	+1.5
1,107,633	-		IAI47_05235	0.88	+1.3
1,107,666	-				-0.8
1,107,674	+				-0.5
1,107,674	+				+1.1
1,107,675	-				-3.6
1,107,675	-				+2.4
1,107,675	-				+0.1
1,107,675	-				+3.8
1,107,675	-				-0.9
1,107,675	-				-0.3
1,107,675	-				+1.6
1,107,724	+				+0.9
1,107,725	-				+1.1
1,107,725	-				-1.1
1,107,772	+				-1.9
1,107,772	+				-0.7
1,107,877	+		IAI47_05240	0.15	+0.2
1,107,878	-		IAI47_05240	0.16	+0.3
1,107,878	-		IAI47_05240	0.16	-2.7
1,107,878	-		IAI47_05240	0.16	-0.4
1,107,931	+		IAI47_05240	0.21	+2.7
1,107,931	+		IAI47_05240	0.21	+1.3
1,107,931	+		IAI47_05240	0.21	-0.7
1,107,931	+		IAI47_05240	0.21	+3.4
1,107,931	+		IAI47_05240	0.21	+0.6
1,107,931	+		IAI47_05240	0.21	+1.6
1,107,931	+		IAI47_05240	0.21	-3.1
1,107,932	-		IAI47_05240	0.21	-2.6
1,107,932	-		IAI47_05240	0.21	+0.6
1,107,986	+		IAI47_05240	0.27	+2.3
1,107,986	+		IAI47_05240	0.27	+1.0
1,107,986	+		IAI47_05240	0.27	-2.1
1,107,986	+		IAI47_05240	0.27	+3.1
1,107,986	+		IAI47_05240	0.27	+0.6
1,107,987	-		IAI47_05240	0.27	+1.3
1,107,987	-		IAI47_05240	0.27	-0.9
1,107,987	-		IAI47_05240	0.27	+0.5
1,108,006	+		IAI47_05240	0.29	-2.5
1,108,006	+		IAI47_05240	0.29	-0.2
1,108,006	+		IAI47_05240	0.29	-2.3
1,108,007	-		IAI47_05240	0.29	-1.4
1,108,007	-		IAI47_05240	0.29	+2.6
1,108,007	-		IAI47_05240	0.29	-0.9
1,108,007	-		IAI47_05240	0.29	-0.7
1,108,007	-		IAI47_05240	0.29	+0.7
1,108,028	+		IAI47_05240	0.31	+0.8
1,108,028	+		IAI47_05240	0.31	-1.4
1,108,132	+		IAI47_05240	0.41	+1.8
1,108,132	+		IAI47_05240	0.41	-0.9
1,108,132	+		IAI47_05240	0.41	+2.1
1,108,132	+		IAI47_05240	0.41	+0.3
1,108,133	-		IAI47_05240	0.41	+0.1
1,108,133	-		IAI47_05240	0.41	-0.0
1,108,133	-		IAI47_05240	0.41	+2.5
1,108,133	-		IAI47_05240	0.41	+4.1
1,108,133	-		IAI47_05240	0.41	-0.5
1,108,133	-		IAI47_05240	0.41	-0.0
1,108,133	-		IAI47_05240	0.41	-0.3
1,108,133	-		IAI47_05240	0.41	+1.2
1,108,133	-		IAI47_05240	0.41	-0.4
1,108,192	+		IAI47_05240	0.47	+1.0
1,108,301	+		IAI47_05240	0.59	-1.4
1,108,301	+		IAI47_05240	0.59	+1.2
1,108,384	+		IAI47_05240	0.67	+3.4
1,108,400	+		IAI47_05240	0.69	+1.1
1,108,400	+		IAI47_05240	0.69	+0.5
1,108,400	+		IAI47_05240	0.69	+1.6
1,108,400	+		IAI47_05240	0.69	+1.7
1,108,401	-		IAI47_05240	0.69	-0.6
1,108,401	-		IAI47_05240	0.69	+1.9
1,108,401	-		IAI47_05240	0.69	+1.7
1,108,401	-		IAI47_05240	0.69	+0.4
1,108,448	-		IAI47_05240	0.73	-1.0
1,108,456	-		IAI47_05240	0.74	+1.2
1,108,522	+		IAI47_05240	0.81	+0.2
1,108,522	+		IAI47_05240	0.81	-1.7
1,108,522	+		IAI47_05240	0.81	+1.5
1,108,522	+		IAI47_05240	0.81	-1.0
1,108,522	+		IAI47_05240	0.81	-0.1
1,108,523	-		IAI47_05240	0.81	+0.3
1,108,523	-		IAI47_05240	0.81	+0.1
1,108,523	-		IAI47_05240	0.81	+0.4
1,108,530	-		IAI47_05240	0.82	-0.7
1,108,559	-		IAI47_05240	0.85	+0.3
1,108,559	-		IAI47_05240	0.85	-0.3
1,108,559	-		IAI47_05240	0.85	+1.0
1,108,559	-		IAI47_05240	0.85	-0.1
1,108,559	-		IAI47_05240	0.85	+2.4
1,108,559	-		IAI47_05240	0.85	-0.4
1,108,584	+		IAI47_05240	0.87	-0.2
1,108,584	+		IAI47_05240	0.87	-0.8
1,108,594	+		IAI47_05240	0.88	-0.3
1,108,660	+				+0.4
1,108,661	-				+0.4
1,108,707	-				+0.2
1,108,764	-				+1.2
1,108,764	-				-1.4
1,108,764	-				-1.3
1,108,764	-				+1.1
1,108,788	+				+1.6
1,108,788	+				-2.3
1,108,789	-				-0.5
1,108,789	-				+0.7
1,108,870	+		IAI47_05245	0.18	-0.3
1,108,870	+		IAI47_05245	0.18	-1.7
1,108,870	+		IAI47_05245	0.18	-0.5
1,108,870	+		IAI47_05245	0.18	-1.4
1,108,870	+		IAI47_05245	0.18	+0.8
1,108,871	-		IAI47_05245	0.18	-3.1
1,108,871	-		IAI47_05245	0.18	-3.1
1,108,871	-		IAI47_05245	0.18	+1.0
1,108,874	+		IAI47_05245	0.19	-1.4
1,108,875	-		IAI47_05245	0.19	+1.2
1,108,875	-		IAI47_05245	0.19	-0.4
1,108,875	-		IAI47_05245	0.19	+3.0
1,108,912	-		IAI47_05245	0.23	+0.2
1,108,912	-		IAI47_05245	0.23	-0.8
1,108,912	-		IAI47_05245	0.23	+0.8
1,108,912	-		IAI47_05245	0.23	+0.8
1,108,956	+		IAI47_05245	0.29	+1.6
1,109,020	-		IAI47_05245	0.36	-1.4
1,109,119	+		IAI47_05245	0.48	-0.4
1,109,119	+		IAI47_05245	0.48	-2.5
1,109,119	+		IAI47_05245	0.48	-0.6
1,109,119	+		IAI47_05245	0.48	-0.1
1,109,119	+		IAI47_05245	0.48	-1.1
1,109,120	-		IAI47_05245	0.48	-1.8
1,109,120	-		IAI47_05245	0.48	+0.2
1,109,120	-		IAI47_05245	0.48	+0.1
1,109,120	-		IAI47_05245	0.48	+2.3
1,109,120	-		IAI47_05245	0.48	-0.4
1,109,120	-		IAI47_05245	0.48	-1.2
1,109,134	+		IAI47_05245	0.50	-1.6
1,109,134	+		IAI47_05245	0.50	+0.2
1,109,135	-		IAI47_05245	0.50	-1.1
1,109,225	+		IAI47_05245	0.61	+1.5
1,109,226	-		IAI47_05245	0.61	+0.6
1,109,290	+		IAI47_05245	0.69	+0.6
1,109,290	+		IAI47_05245	0.69	-1.5
1,109,290	+		IAI47_05245	0.69	+1.2
1,109,291	-		IAI47_05245	0.69	+0.5
1,109,372	-		IAI47_05245	0.79	+0.5
1,109,372	-		IAI47_05245	0.79	+0.1
1,109,420	+		IAI47_05245	0.84	-0.1
1,109,440	-		IAI47_05245	0.87	-0.5
1,109,443	+		IAI47_05245	0.87	-1.8
1,109,444	-		IAI47_05245	0.87	+1.6
1,109,523	+				-0.3
1,109,523	+				-0.9
1,109,524	-				-2.0
1,109,524	-				+0.5
1,109,524	-				+0.3
1,109,539	+				-1.7
1,109,548	-				-1.3
1,109,557	+				-0.3
1,109,557	+				-1.9
1,109,557	+				-1.7
1,109,557	+				-1.4
1,109,557	+				-0.3
1,109,557	+				+0.5
1,109,557	+				+0.3
1,109,558	-				+2.3
1,109,565	+				+3.0
1,109,568	+				+2.3
1,109,569	-				+0.8
1,109,578	-				-1.1
1,109,590	-				+0.1
1,109,590	-				+1.1
1,109,624	+				-0.4
1,109,624	+				-2.7
1,109,625	-				-1.4
1,109,625	-				+1.1
1,109,625	-				-0.7
1,109,656	-				-0.4