Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20450 and CA265_RS20455 are separated by 27 nucleotides CA265_RS20455 and CA265_RS20460 are separated by 6 nucleotides
CA265_RS20450: CA265_RS20450 - hypothetical protein, at 5,055,966 to 5,057,324
_RS20450
CA265_RS20455: CA265_RS20455 - hypothetical protein, at 5,057,352 to 5,060,123
_RS20455
CA265_RS20460: CA265_RS20460 - hypothetical protein, at 5,060,130 to 5,061,224
_RS20460
Position (kb) 5057
5058
5059
5060
5061 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5056.352 kb on - strand, within CA265_RS20450 at 5056.378 kb on + strand, within CA265_RS20450 at 5056.419 kb on - strand, within CA265_RS20450 at 5056.469 kb on - strand, within CA265_RS20450 at 5056.469 kb on - strand, within CA265_RS20450 at 5056.475 kb on - strand, within CA265_RS20450 at 5056.530 kb on + strand, within CA265_RS20450 at 5056.531 kb on - strand, within CA265_RS20450 at 5056.555 kb on + strand, within CA265_RS20450 at 5056.631 kb on + strand, within CA265_RS20450 at 5056.711 kb on - strand, within CA265_RS20450 at 5056.752 kb on - strand, within CA265_RS20450 at 5056.756 kb on + strand, within CA265_RS20450 at 5056.757 kb on - strand, within CA265_RS20450 at 5056.779 kb on - strand, within CA265_RS20450 at 5056.921 kb on + strand, within CA265_RS20450 at 5056.940 kb on - strand, within CA265_RS20450 at 5056.943 kb on - strand, within CA265_RS20450 at 5056.977 kb on - strand, within CA265_RS20450 at 5056.979 kb on + strand, within CA265_RS20450 at 5057.011 kb on + strand, within CA265_RS20450 at 5057.098 kb on + strand, within CA265_RS20450 at 5057.099 kb on - strand, within CA265_RS20450 at 5057.162 kb on + strand, within CA265_RS20450 at 5057.162 kb on + strand, within CA265_RS20450 at 5057.163 kb on - strand, within CA265_RS20450 at 5057.212 kb on + strand at 5057.244 kb on - strand at 5057.253 kb on + strand at 5057.267 kb on + strand at 5057.268 kb on - strand at 5057.318 kb on + strand at 5057.434 kb on + strand at 5057.455 kb on + strand at 5057.526 kb on + strand at 5057.526 kb on + strand at 5057.527 kb on - strand at 5057.527 kb on - strand at 5057.527 kb on - strand at 5057.527 kb on - strand at 5057.584 kb on - strand at 5057.599 kb on + strand at 5057.599 kb on + strand at 5057.600 kb on - strand at 5057.604 kb on - strand at 5057.606 kb on + strand at 5057.606 kb on + strand at 5057.607 kb on - strand at 5057.613 kb on + strand at 5057.614 kb on - strand at 5057.614 kb on - strand at 5057.629 kb on - strand at 5057.690 kb on - strand, within CA265_RS20455 at 5057.716 kb on - strand, within CA265_RS20455 at 5057.720 kb on - strand, within CA265_RS20455 at 5057.720 kb on - strand, within CA265_RS20455 at 5057.763 kb on + strand, within CA265_RS20455 at 5057.763 kb on + strand, within CA265_RS20455 at 5057.767 kb on + strand, within CA265_RS20455 at 5057.767 kb on + strand, within CA265_RS20455 at 5057.767 kb on + strand, within CA265_RS20455 at 5057.767 kb on + strand, within CA265_RS20455 at 5057.767 kb on + strand, within CA265_RS20455 at 5057.768 kb on - strand, within CA265_RS20455 at 5057.808 kb on + strand, within CA265_RS20455 at 5057.809 kb on - strand, within CA265_RS20455 at 5057.813 kb on + strand, within CA265_RS20455 at 5057.814 kb on - strand, within CA265_RS20455 at 5057.872 kb on - strand, within CA265_RS20455 at 5057.959 kb on + strand, within CA265_RS20455 at 5058.007 kb on + strand, within CA265_RS20455 at 5058.007 kb on + strand, within CA265_RS20455 at 5058.007 kb on + strand, within CA265_RS20455 at 5058.010 kb on - strand, within CA265_RS20455 at 5058.010 kb on - strand, within CA265_RS20455 at 5058.031 kb on + strand, within CA265_RS20455 at 5058.055 kb on + strand, within CA265_RS20455 at 5058.087 kb on + strand, within CA265_RS20455 at 5058.154 kb on + strand, within CA265_RS20455 at 5058.281 kb on - strand, within CA265_RS20455 at 5058.284 kb on + strand, within CA265_RS20455 at 5058.284 kb on + strand, within CA265_RS20455 at 5058.369 kb on + strand, within CA265_RS20455 at 5058.369 kb on + strand, within CA265_RS20455 at 5058.370 kb on - strand, within CA265_RS20455 at 5058.372 kb on + strand, within CA265_RS20455 at 5058.372 kb on + strand, within CA265_RS20455 at 5058.381 kb on + strand, within CA265_RS20455 at 5058.410 kb on + strand, within CA265_RS20455 at 5058.411 kb on - strand, within CA265_RS20455 at 5058.415 kb on + strand, within CA265_RS20455 at 5058.437 kb on + strand, within CA265_RS20455 at 5058.506 kb on + strand, within CA265_RS20455 at 5058.507 kb on - strand, within CA265_RS20455 at 5058.610 kb on + strand, within CA265_RS20455 at 5058.682 kb on + strand, within CA265_RS20455 at 5058.731 kb on + strand, within CA265_RS20455 at 5058.732 kb on - strand, within CA265_RS20455 at 5058.747 kb on + strand, within CA265_RS20455 at 5058.747 kb on + strand, within CA265_RS20455 at 5058.752 kb on + strand, within CA265_RS20455 at 5058.756 kb on + strand, within CA265_RS20455 at 5058.757 kb on - strand, within CA265_RS20455 at 5058.908 kb on - strand, within CA265_RS20455 at 5058.908 kb on - strand, within CA265_RS20455 at 5058.914 kb on + strand, within CA265_RS20455 at 5058.915 kb on - strand, within CA265_RS20455 at 5058.915 kb on - strand, within CA265_RS20455 at 5058.915 kb on - strand, within CA265_RS20455 at 5058.916 kb on + strand, within CA265_RS20455 at 5058.940 kb on + strand, within CA265_RS20455 at 5058.940 kb on + strand, within CA265_RS20455 at 5059.004 kb on + strand, within CA265_RS20455 at 5059.004 kb on + strand, within CA265_RS20455 at 5059.041 kb on - strand, within CA265_RS20455 at 5059.091 kb on - strand, within CA265_RS20455 at 5059.161 kb on - strand, within CA265_RS20455 at 5059.161 kb on - strand, within CA265_RS20455 at 5059.163 kb on - strand, within CA265_RS20455 at 5059.166 kb on - strand, within CA265_RS20455 at 5059.173 kb on + strand, within CA265_RS20455 at 5059.201 kb on - strand, within CA265_RS20455 at 5059.203 kb on - strand, within CA265_RS20455 at 5059.212 kb on + strand, within CA265_RS20455 at 5059.275 kb on + strand, within CA265_RS20455 at 5059.275 kb on + strand, within CA265_RS20455 at 5059.276 kb on - strand, within CA265_RS20455 at 5059.368 kb on - strand, within CA265_RS20455 at 5059.406 kb on + strand, within CA265_RS20455 at 5059.407 kb on - strand, within CA265_RS20455 at 5059.442 kb on - strand, within CA265_RS20455 at 5059.443 kb on + strand, within CA265_RS20455 at 5059.444 kb on - strand, within CA265_RS20455 at 5059.444 kb on - strand, within CA265_RS20455 at 5059.448 kb on + strand, within CA265_RS20455 at 5059.448 kb on + strand, within CA265_RS20455 at 5059.449 kb on - strand, within CA265_RS20455 at 5059.483 kb on + strand, within CA265_RS20455 at 5059.484 kb on - strand, within CA265_RS20455 at 5059.535 kb on + strand, within CA265_RS20455 at 5059.652 kb on - strand, within CA265_RS20455 at 5059.692 kb on - strand, within CA265_RS20455 at 5059.692 kb on - strand, within CA265_RS20455 at 5059.770 kb on + strand, within CA265_RS20455 at 5059.770 kb on + strand, within CA265_RS20455 at 5059.778 kb on + strand, within CA265_RS20455 at 5059.778 kb on + strand, within CA265_RS20455 at 5059.779 kb on - strand, within CA265_RS20455 at 5059.779 kb on - strand, within CA265_RS20455 at 5059.779 kb on - strand, within CA265_RS20455 at 5059.780 kb on + strand, within CA265_RS20455 at 5059.919 kb on + strand at 5059.947 kb on + strand at 5060.006 kb on + strand at 5060.021 kb on + strand at 5060.021 kb on + strand at 5060.022 kb on - strand at 5060.022 kb on - strand at 5060.022 kb on - strand at 5060.085 kb on + strand at 5060.086 kb on - strand at 5060.100 kb on - strand at 5060.115 kb on - strand at 5060.127 kb on + strand at 5060.127 kb on + strand at 5060.127 kb on + strand at 5060.132 kb on - strand at 5060.138 kb on + strand at 5060.188 kb on + strand at 5060.221 kb on + strand at 5060.250 kb on + strand, within CA265_RS20460 at 5060.250 kb on + strand, within CA265_RS20460 at 5060.268 kb on - strand, within CA265_RS20460 at 5060.270 kb on + strand, within CA265_RS20460 at 5060.403 kb on + strand, within CA265_RS20460 at 5060.407 kb on - strand, within CA265_RS20460 at 5060.499 kb on - strand at 5060.501 kb on + strand, within CA265_RS20460 at 5060.507 kb on - strand, within CA265_RS20460 at 5060.621 kb on + strand, within CA265_RS20460 at 5060.624 kb on + strand, within CA265_RS20460 at 5060.624 kb on + strand, within CA265_RS20460 at 5060.625 kb on - strand, within CA265_RS20460 at 5060.625 kb on - strand, within CA265_RS20460 at 5060.626 kb on + strand, within CA265_RS20460 at 5060.709 kb on + strand, within CA265_RS20460 at 5060.710 kb on - strand, within CA265_RS20460 at 5060.710 kb on - strand, within CA265_RS20460 at 5060.739 kb on + strand, within CA265_RS20460 at 5060.740 kb on - strand, within CA265_RS20460 at 5060.746 kb on + strand, within CA265_RS20460 at 5060.750 kb on + strand, within CA265_RS20460 at 5060.750 kb on + strand, within CA265_RS20460 at 5060.805 kb on - strand, within CA265_RS20460 at 5060.805 kb on - strand, within CA265_RS20460 at 5060.873 kb on - strand, within CA265_RS20460 at 5060.886 kb on + strand, within CA265_RS20460 at 5060.974 kb on + strand, within CA265_RS20460 at 5060.979 kb on - strand, within CA265_RS20460 at 5061.045 kb on + strand, within CA265_RS20460 at 5061.046 kb on - strand, within CA265_RS20460 at 5061.046 kb on - strand, within CA265_RS20460 at 5061.070 kb on + strand, within CA265_RS20460 at 5061.075 kb on - strand, within CA265_RS20460 at 5061.099 kb on + strand, within CA265_RS20460 at 5061.099 kb on + strand, within CA265_RS20460 at 5061.100 kb on - strand, within CA265_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,056,352 - CA265_RS20450 0.28 -0.8 5,056,378 + CA265_RS20450 0.30 +0.2 5,056,419 - CA265_RS20450 0.33 +0.3 5,056,469 - CA265_RS20450 0.37 +2.9 5,056,469 - CA265_RS20450 0.37 +0.1 5,056,475 - CA265_RS20450 0.37 -0.9 5,056,530 + CA265_RS20450 0.42 +0.1 5,056,531 - CA265_RS20450 0.42 +0.1 5,056,555 + CA265_RS20450 0.43 +1.0 5,056,631 + CA265_RS20450 0.49 -1.0 5,056,711 - CA265_RS20450 0.55 +2.0 5,056,752 - CA265_RS20450 0.58 -0.7 5,056,756 + CA265_RS20450 0.58 -0.2 5,056,757 - CA265_RS20450 0.58 -1.0 5,056,779 - CA265_RS20450 0.60 -0.0 5,056,921 + CA265_RS20450 0.70 +0.5 5,056,940 - CA265_RS20450 0.72 -1.0 5,056,943 - CA265_RS20450 0.72 -0.1 5,056,977 - CA265_RS20450 0.74 +0.8 5,056,979 + CA265_RS20450 0.75 -2.2 5,057,011 + CA265_RS20450 0.77 -0.0 5,057,098 + CA265_RS20450 0.83 +1.1 5,057,099 - CA265_RS20450 0.83 +0.7 5,057,162 + CA265_RS20450 0.88 -0.3 5,057,162 + CA265_RS20450 0.88 +0.5 5,057,163 - CA265_RS20450 0.88 -0.3 5,057,212 + +0.1 5,057,244 - +0.7 5,057,253 + +1.1 5,057,267 + -0.1 5,057,268 - -1.4 5,057,318 + -0.0 5,057,434 + -0.4 5,057,455 + +0.4 5,057,526 + +0.5 5,057,526 + +0.6 5,057,527 - -0.1 5,057,527 - -0.0 5,057,527 - -0.1 5,057,527 - -0.8 5,057,584 - -0.3 5,057,599 + +0.3 5,057,599 + +0.5 5,057,600 - +1.4 5,057,604 - +0.3 5,057,606 + -0.2 5,057,606 + +0.3 5,057,607 - +0.1 5,057,613 + +0.4 5,057,614 - +0.1 5,057,614 - -0.5 5,057,629 - +0.2 5,057,690 - CA265_RS20455 0.12 -0.9 5,057,716 - CA265_RS20455 0.13 +0.7 5,057,720 - CA265_RS20455 0.13 +1.1 5,057,720 - CA265_RS20455 0.13 -0.5 5,057,763 + CA265_RS20455 0.15 +0.2 5,057,763 + CA265_RS20455 0.15 +0.8 5,057,767 + CA265_RS20455 0.15 +0.3 5,057,767 + CA265_RS20455 0.15 +1.3 5,057,767 + CA265_RS20455 0.15 +0.1 5,057,767 + CA265_RS20455 0.15 -0.4 5,057,767 + CA265_RS20455 0.15 -0.5 5,057,768 - CA265_RS20455 0.15 -1.5 5,057,808 + CA265_RS20455 0.16 -0.1 5,057,809 - CA265_RS20455 0.16 +1.6 5,057,813 + CA265_RS20455 0.17 +0.2 5,057,814 - CA265_RS20455 0.17 -0.5 5,057,872 - CA265_RS20455 0.19 -1.2 5,057,959 + CA265_RS20455 0.22 +0.6 5,058,007 + CA265_RS20455 0.24 -0.4 5,058,007 + CA265_RS20455 0.24 +0.2 5,058,007 + CA265_RS20455 0.24 +0.5 5,058,010 - CA265_RS20455 0.24 +0.5 5,058,010 - CA265_RS20455 0.24 -0.8 5,058,031 + CA265_RS20455 0.24 +1.2 5,058,055 + CA265_RS20455 0.25 +0.3 5,058,087 + CA265_RS20455 0.27 -0.5 5,058,154 + CA265_RS20455 0.29 -1.2 5,058,281 - CA265_RS20455 0.34 +1.4 5,058,284 + CA265_RS20455 0.34 -0.3 5,058,284 + CA265_RS20455 0.34 +0.0 5,058,369 + CA265_RS20455 0.37 +0.3 5,058,369 + CA265_RS20455 0.37 -1.2 5,058,370 - CA265_RS20455 0.37 -0.3 5,058,372 + CA265_RS20455 0.37 -0.3 5,058,372 + CA265_RS20455 0.37 -0.0 5,058,381 + CA265_RS20455 0.37 +0.3 5,058,410 + CA265_RS20455 0.38 -0.5 5,058,411 - CA265_RS20455 0.38 -0.5 5,058,415 + CA265_RS20455 0.38 -0.1 5,058,437 + CA265_RS20455 0.39 -0.5 5,058,506 + CA265_RS20455 0.42 +0.9 5,058,507 - CA265_RS20455 0.42 -1.4 5,058,610 + CA265_RS20455 0.45 -0.2 5,058,682 + CA265_RS20455 0.48 -0.3 5,058,731 + CA265_RS20455 0.50 +0.9 5,058,732 - CA265_RS20455 0.50 -1.8 5,058,747 + CA265_RS20455 0.50 -0.2 5,058,747 + CA265_RS20455 0.50 -0.8 5,058,752 + CA265_RS20455 0.51 -0.9 5,058,756 + CA265_RS20455 0.51 -2.0 5,058,757 - CA265_RS20455 0.51 -1.7 5,058,908 - CA265_RS20455 0.56 -1.0 5,058,908 - CA265_RS20455 0.56 -0.2 5,058,914 + CA265_RS20455 0.56 +0.3 5,058,915 - CA265_RS20455 0.56 +0.1 5,058,915 - CA265_RS20455 0.56 -0.4 5,058,915 - CA265_RS20455 0.56 -0.7 5,058,916 + CA265_RS20455 0.56 -0.3 5,058,940 + CA265_RS20455 0.57 +0.3 5,058,940 + CA265_RS20455 0.57 -0.5 5,059,004 + CA265_RS20455 0.60 +0.9 5,059,004 + CA265_RS20455 0.60 -1.2 5,059,041 - CA265_RS20455 0.61 -0.9 5,059,091 - CA265_RS20455 0.63 -0.5 5,059,161 - CA265_RS20455 0.65 -0.2 5,059,161 - CA265_RS20455 0.65 +1.1 5,059,163 - CA265_RS20455 0.65 +2.3 5,059,166 - CA265_RS20455 0.65 -0.2 5,059,173 + CA265_RS20455 0.66 +0.0 5,059,201 - CA265_RS20455 0.67 +0.3 5,059,203 - CA265_RS20455 0.67 -0.1 5,059,212 + CA265_RS20455 0.67 +0.2 5,059,275 + CA265_RS20455 0.69 -0.5 5,059,275 + CA265_RS20455 0.69 +0.0 5,059,276 - CA265_RS20455 0.69 +1.8 5,059,368 - CA265_RS20455 0.73 +0.9 5,059,406 + CA265_RS20455 0.74 -0.3 5,059,407 - CA265_RS20455 0.74 -0.8 5,059,442 - CA265_RS20455 0.75 +0.5 5,059,443 + CA265_RS20455 0.75 -2.1 5,059,444 - CA265_RS20455 0.75 -0.6 5,059,444 - CA265_RS20455 0.75 +0.3 5,059,448 + CA265_RS20455 0.76 -0.5 5,059,448 + CA265_RS20455 0.76 -0.7 5,059,449 - CA265_RS20455 0.76 -1.4 5,059,483 + CA265_RS20455 0.77 -0.7 5,059,484 - CA265_RS20455 0.77 -0.0 5,059,535 + CA265_RS20455 0.79 -0.9 5,059,652 - CA265_RS20455 0.83 -0.6 5,059,692 - CA265_RS20455 0.84 +0.8 5,059,692 - CA265_RS20455 0.84 -0.4 5,059,770 + CA265_RS20455 0.87 -1.1 5,059,770 + CA265_RS20455 0.87 +0.2 5,059,778 + CA265_RS20455 0.88 -0.7 5,059,778 + CA265_RS20455 0.88 +0.4 5,059,779 - CA265_RS20455 0.88 +0.7 5,059,779 - CA265_RS20455 0.88 -1.0 5,059,779 - CA265_RS20455 0.88 -0.0 5,059,780 + CA265_RS20455 0.88 -1.0 5,059,919 + +0.4 5,059,947 + -1.0 5,060,006 + -0.3 5,060,021 + +0.1 5,060,021 + +0.3 5,060,022 - -0.2 5,060,022 - -0.5 5,060,022 - -0.0 5,060,085 + -0.2 5,060,086 - -2.0 5,060,100 - +1.4 5,060,115 - -0.2 5,060,127 + +0.3 5,060,127 + -0.7 5,060,127 + +0.3 5,060,132 - +0.8 5,060,138 + +0.1 5,060,188 + +0.4 5,060,221 + -0.1 5,060,250 + CA265_RS20460 0.11 +0.1 5,060,250 + CA265_RS20460 0.11 -0.0 5,060,268 - CA265_RS20460 0.13 -0.1 5,060,270 + CA265_RS20460 0.13 +0.1 5,060,403 + CA265_RS20460 0.25 +0.6 5,060,407 - CA265_RS20460 0.25 +0.3 5,060,499 - -0.3 5,060,501 + CA265_RS20460 0.34 +0.5 5,060,507 - CA265_RS20460 0.34 +0.7 5,060,621 + CA265_RS20460 0.45 -0.4 5,060,624 + CA265_RS20460 0.45 -0.7 5,060,624 + CA265_RS20460 0.45 +1.3 5,060,625 - CA265_RS20460 0.45 +0.8 5,060,625 - CA265_RS20460 0.45 +0.4 5,060,626 + CA265_RS20460 0.45 +0.6 5,060,709 + CA265_RS20460 0.53 +0.3 5,060,710 - CA265_RS20460 0.53 +0.7 5,060,710 - CA265_RS20460 0.53 +0.6 5,060,739 + CA265_RS20460 0.56 -0.3 5,060,740 - CA265_RS20460 0.56 -0.3 5,060,746 + CA265_RS20460 0.56 -0.0 5,060,750 + CA265_RS20460 0.57 +0.3 5,060,750 + CA265_RS20460 0.57 -0.2 5,060,805 - CA265_RS20460 0.62 -0.1 5,060,805 - CA265_RS20460 0.62 +0.8 5,060,873 - CA265_RS20460 0.68 +0.3 5,060,886 + CA265_RS20460 0.69 -0.8 5,060,974 + CA265_RS20460 0.77 +0.6 5,060,979 - CA265_RS20460 0.78 +0.1 5,061,045 + CA265_RS20460 0.84 +1.3 5,061,046 - CA265_RS20460 0.84 -0.2 5,061,046 - CA265_RS20460 0.84 -2.4 5,061,070 + CA265_RS20460 0.86 +1.5 5,061,075 - CA265_RS20460 0.86 -0.8 5,061,099 + CA265_RS20460 0.88 -0.0 5,061,099 + CA265_RS20460 0.88 +1.1 5,061,100 - CA265_RS20460 0.89 +2.0
Or see this region's nucleotide sequence