Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05545

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
1,343,708	+		CA265_RS05540	0.34	+0.4
1,343,709	-		CA265_RS05540	0.34	-1.3
1,343,852	+		CA265_RS05540	0.44	+0.2
1,343,882	+		CA265_RS05540	0.46	+0.2
1,343,882	+		CA265_RS05540	0.46	+0.1
1,343,905	+		CA265_RS05540	0.47	-0.7
1,343,906	-		CA265_RS05540	0.47	+0.8
1,343,906	-		CA265_RS05540	0.47	-0.5
1,344,003	+		CA265_RS05540	0.54	+0.8
1,344,003	+		CA265_RS05540	0.54	+0.3
1,344,004	-		CA265_RS05540	0.54	-0.1
1,344,004	-		CA265_RS05540	0.54	-1.0
1,344,004	-		CA265_RS05540	0.54	-0.9
1,344,067	-		CA265_RS05540	0.58	+0.3
1,344,165	+		CA265_RS05540	0.65	+0.4
1,344,166	-		CA265_RS05540	0.65	+0.3
1,344,170	-		CA265_RS05540	0.65	-0.5
1,344,170	-		CA265_RS05540	0.65	+0.1
1,344,193	+		CA265_RS05540	0.67	+0.7
1,344,208	-		CA265_RS05540	0.68	-1.7
1,344,241	+		CA265_RS05540	0.70	+0.8
1,344,242	-		CA265_RS05540	0.70	-1.9
1,344,244	-		CA265_RS05540	0.70	+0.0
1,344,276	+		CA265_RS05540	0.73	+1.0
1,344,276	+		CA265_RS05540	0.73	-0.2
1,344,277	-		CA265_RS05540	0.73	-0.2
1,344,277	-		CA265_RS05540	0.73	+0.4
1,344,389	+		CA265_RS05540	0.80	-0.2
1,344,389	+		CA265_RS05540	0.80	+0.2
1,344,389	+		CA265_RS05540	0.80	+0.5
1,344,390	-		CA265_RS05540	0.80	+0.6
1,344,390	-		CA265_RS05540	0.80	-0.1
1,344,424	-		CA265_RS05540	0.83	-0.1
1,344,505	+		CA265_RS05540	0.88	+0.6
1,344,528	-		CA265_RS05540	0.90	+0.1
1,344,528	-		CA265_RS05540	0.90	+0.4
1,344,531	+				+0.4
1,344,586	-				-0.1
1,344,665	-				-1.6
1,344,699	+				-0.3
1,344,699	+				+0.8
1,344,745	-				-0.6
1,344,767	-				-2.7
1,344,806	-				-0.3
1,344,808	+				+0.1
1,344,877	+		CA265_RS05545	0.11	+0.3
1,344,899	+		CA265_RS05545	0.12	-0.0
1,344,905	-		CA265_RS05545	0.12	+0.6
1,344,908	+		CA265_RS05545	0.12	-0.8
1,344,908	+		CA265_RS05545	0.12	-0.4
1,344,909	-		CA265_RS05545	0.12	+0.4
1,344,909	-		CA265_RS05545	0.12	-0.5
1,344,931	+		CA265_RS05545	0.13	+0.0
1,345,033	+		CA265_RS05545	0.19	-0.5
1,345,064	-		CA265_RS05545	0.21	-0.5
1,345,064	-		CA265_RS05545	0.21	-0.0
1,345,126	+		CA265_RS05545	0.24	-1.0
1,345,128	+		CA265_RS05545	0.24	+1.6
1,345,129	-		CA265_RS05545	0.24	+0.3
1,345,129	-		CA265_RS05545	0.24	+0.9
1,345,132	+		CA265_RS05545	0.25	+0.9
1,345,138	+		CA265_RS05545	0.25	+0.6
1,345,138	+		CA265_RS05545	0.25	+1.5
1,345,231	+		CA265_RS05545	0.30	+0.6
1,345,259	-		CA265_RS05545	0.32	-0.4
1,345,261	+		CA265_RS05545	0.32	+0.4
1,345,262	-		CA265_RS05545	0.32	+0.6
1,345,269	-		CA265_RS05545	0.32	-0.0
1,345,280	-		CA265_RS05545	0.33	+0.5
1,345,322	+		CA265_RS05545	0.35	-0.0
1,345,326	+		CA265_RS05545	0.35	-1.3
1,345,327	-		CA265_RS05545	0.35	+0.2
1,345,349	-		CA265_RS05545	0.37	+1.0
1,345,416	-		CA265_RS05545	0.40	-0.3
1,345,484	+		CA265_RS05545	0.44	+0.5
1,345,484	+		CA265_RS05545	0.44	-0.9
1,345,484	+		CA265_RS05545	0.44	+0.8
1,345,484	+		CA265_RS05545	0.44	+0.1
1,345,485	-		CA265_RS05545	0.44	+1.9
1,345,519	+		CA265_RS05545	0.46	+0.3
1,345,528	+		CA265_RS05545	0.46	+0.1
1,345,576	-		CA265_RS05545	0.49	+0.3
1,345,606	-		CA265_RS05545	0.51	+0.3
1,345,609	-		CA265_RS05545	0.51	-0.4
1,345,669	+		CA265_RS05545	0.54	+0.0
1,345,670	-		CA265_RS05545	0.54	-0.1
1,345,738	+		CA265_RS05545	0.58	+0.1
1,345,738	+		CA265_RS05545	0.58	+0.4
1,345,860	+		CA265_RS05545	0.65	-0.1
1,345,918	-		CA265_RS05545	0.68	-0.4
1,345,966	+		CA265_RS05545	0.71	+0.4
1,346,060	-		CA265_RS05545	0.76	+0.4
1,346,063	+		CA265_RS05545	0.76	+0.3
1,346,064	-		CA265_RS05545	0.76	-0.2
1,346,064	-		CA265_RS05545	0.76	+0.5
1,346,064	-		CA265_RS05545	0.76	+0.3
1,346,124	+		CA265_RS05545	0.79	+0.5
1,346,238	-		CA265_RS05545	0.86	-0.8
1,346,239	+		CA265_RS05545	0.86	+0.1
1,346,240	-		CA265_RS05545	0.86	+0.5
1,346,259	+		CA265_RS05545	0.87	+0.9
1,346,259	+		CA265_RS05545	0.87	+0.7
1,346,271	+		CA265_RS05545	0.87	+0.3
1,346,413	+				+0.4
1,346,487	-				-0.4
1,346,487	-				-0.6
1,346,545	+				+0.4
1,346,554	+				-1.0
1,346,596	-				-0.6
1,346,625	+				-0.3
1,346,633	+				-0.3
1,346,633	+				+1.3
1,346,637	+				+0.3
1,346,646	-				-0.5
1,346,722	-		CA265_RS05550	0.13	-0.1
1,346,722	-		CA265_RS05550	0.13	-0.6
1,346,849	+		CA265_RS05550	0.22	-0.3
1,346,854	-		CA265_RS05550	0.22	-0.1
1,346,857	+		CA265_RS05550	0.23	+0.8
1,346,904	+		CA265_RS05550	0.26	-1.6
1,346,947	-		CA265_RS05550	0.29	+0.3
1,346,989	+		CA265_RS05550	0.32	-0.7
1,346,989	+		CA265_RS05550	0.32	+0.1
1,346,990	-		CA265_RS05550	0.32	+0.5
1,346,990	-		CA265_RS05550	0.32	+0.2
1,346,990	-		CA265_RS05550	0.32	-0.1
1,346,990	-		CA265_RS05550	0.32	-0.2
1,346,996	+		CA265_RS05550	0.32	+0.1
1,347,034	+		CA265_RS05550	0.35	-0.2
1,347,035	-		CA265_RS05550	0.35	+0.2
1,347,037	-		CA265_RS05550	0.35	-0.3
1,347,037	-				-0.8
1,347,081	+		CA265_RS05550	0.38	+0.1
1,347,122	+		CA265_RS05550	0.41	-1.0
1,347,132	+		CA265_RS05550	0.42	-0.1
1,347,133	-		CA265_RS05550	0.42	-0.4
1,347,133	-		CA265_RS05550	0.42	+0.5
1,347,138	-		CA265_RS05550	0.42	-0.1
1,347,186	+		CA265_RS05550	0.46	+0.1
1,347,186	+		CA265_RS05550	0.46	+0.8
1,347,190	+		CA265_RS05550	0.46	+0.1
1,347,191	-		CA265_RS05550	0.46	-0.1
1,347,191	-		CA265_RS05550	0.46	+0.2
1,347,233	-		CA265_RS05550	0.49	+0.5
1,347,238	+		CA265_RS05550	0.49	+0.7
1,347,292	+		CA265_RS05550	0.53	-1.3
1,347,293	-		CA265_RS05550	0.53	+0.1
1,347,353	+		CA265_RS05550	0.57	-0.2
1,347,353	+		CA265_RS05550	0.57	+0.5
1,347,388	-		CA265_RS05550	0.60	-0.6
1,347,394	-		CA265_RS05550	0.60	-0.7
1,347,394	-		CA265_RS05550	0.60	-0.1
1,347,401	+		CA265_RS05550	0.61	+0.2