Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01240 and CA265_RS01245 are separated by 171 nucleotides CA265_RS01245 and CA265_RS01250 are separated by 6 nucleotides CA265_RS01250 and CA265_RS01255 are separated by 0 nucleotides
CA265_RS01240: CA265_RS01240 - hypothetical protein, at 307,577 to 308,749
_RS01240
CA265_RS01245: CA265_RS01245 - hypothetical protein, at 308,921 to 310,324
_RS01245
CA265_RS01250: CA265_RS01250 - hypothetical protein, at 310,331 to 310,762
_RS01250
CA265_RS01255: CA265_RS01255 - hypothetical protein, at 310,763 to 311,734
_RS01255
Position (kb) 308
309
310
311 Strain fitness (log2 ratio) -1
0
1 at 308.015 kb on + strand, within CA265_RS01240 at 308.032 kb on - strand, within CA265_RS01240 at 308.122 kb on + strand, within CA265_RS01240 at 308.123 kb on - strand, within CA265_RS01240 at 308.155 kb on - strand, within CA265_RS01240 at 308.161 kb on + strand, within CA265_RS01240 at 308.167 kb on + strand, within CA265_RS01240 at 308.168 kb on - strand, within CA265_RS01240 at 308.179 kb on - strand, within CA265_RS01240 at 308.233 kb on - strand, within CA265_RS01240 at 308.325 kb on + strand, within CA265_RS01240 at 308.326 kb on - strand, within CA265_RS01240 at 308.443 kb on - strand, within CA265_RS01240 at 308.490 kb on - strand, within CA265_RS01240 at 308.528 kb on - strand, within CA265_RS01240 at 308.561 kb on - strand, within CA265_RS01240 at 308.561 kb on - strand, within CA265_RS01240 at 308.564 kb on + strand, within CA265_RS01240 at 308.632 kb on - strand at 308.726 kb on + strand at 308.748 kb on - strand at 308.784 kb on - strand at 308.784 kb on - strand at 308.788 kb on - strand at 308.802 kb on + strand at 308.849 kb on - strand at 308.872 kb on + strand at 308.952 kb on + strand at 309.022 kb on - strand at 309.037 kb on - strand at 309.037 kb on - strand at 309.060 kb on - strand at 309.064 kb on + strand, within CA265_RS01245 at 309.076 kb on - strand, within CA265_RS01245 at 309.083 kb on - strand, within CA265_RS01245 at 309.124 kb on + strand, within CA265_RS01245 at 309.141 kb on - strand, within CA265_RS01245 at 309.141 kb on - strand, within CA265_RS01245 at 309.214 kb on - strand, within CA265_RS01245 at 309.228 kb on + strand, within CA265_RS01245 at 309.305 kb on - strand, within CA265_RS01245 at 309.311 kb on - strand, within CA265_RS01245 at 309.323 kb on - strand, within CA265_RS01245 at 309.328 kb on + strand, within CA265_RS01245 at 309.332 kb on - strand, within CA265_RS01245 at 309.332 kb on - strand, within CA265_RS01245 at 309.336 kb on + strand, within CA265_RS01245 at 309.336 kb on + strand, within CA265_RS01245 at 309.337 kb on - strand, within CA265_RS01245 at 309.337 kb on - strand, within CA265_RS01245 at 309.348 kb on + strand, within CA265_RS01245 at 309.349 kb on - strand, within CA265_RS01245 at 309.349 kb on - strand, within CA265_RS01245 at 309.352 kb on + strand, within CA265_RS01245 at 309.383 kb on - strand, within CA265_RS01245 at 309.383 kb on - strand, within CA265_RS01245 at 309.385 kb on - strand, within CA265_RS01245 at 309.453 kb on - strand, within CA265_RS01245 at 309.466 kb on + strand, within CA265_RS01245 at 309.466 kb on + strand, within CA265_RS01245 at 309.494 kb on - strand, within CA265_RS01245 at 309.613 kb on - strand, within CA265_RS01245 at 309.613 kb on - strand, within CA265_RS01245 at 309.639 kb on - strand, within CA265_RS01245 at 309.643 kb on - strand, within CA265_RS01245 at 309.643 kb on - strand, within CA265_RS01245 at 309.645 kb on + strand, within CA265_RS01245 at 309.677 kb on + strand, within CA265_RS01245 at 309.679 kb on + strand, within CA265_RS01245 at 309.680 kb on - strand, within CA265_RS01245 at 309.787 kb on + strand, within CA265_RS01245 at 310.029 kb on + strand, within CA265_RS01245 at 310.143 kb on + strand, within CA265_RS01245 at 310.144 kb on - strand, within CA265_RS01245 at 310.182 kb on + strand, within CA265_RS01245 at 310.209 kb on + strand at 310.209 kb on + strand at 310.303 kb on - strand at 310.303 kb on - strand at 310.311 kb on + strand at 310.322 kb on + strand at 310.323 kb on - strand at 310.356 kb on + strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.357 kb on - strand at 310.362 kb on + strand at 310.363 kb on - strand at 310.425 kb on - strand, within CA265_RS01250 at 310.486 kb on - strand, within CA265_RS01250 at 310.490 kb on + strand, within CA265_RS01250 at 310.491 kb on - strand, within CA265_RS01250 at 310.491 kb on - strand, within CA265_RS01250 at 310.502 kb on - strand, within CA265_RS01250 at 310.515 kb on + strand, within CA265_RS01250 at 310.675 kb on - strand, within CA265_RS01250 at 310.681 kb on + strand, within CA265_RS01250 at 310.682 kb on - strand, within CA265_RS01250 at 310.850 kb on - strand at 310.887 kb on + strand, within CA265_RS01255 at 310.887 kb on + strand, within CA265_RS01255 at 310.887 kb on + strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.888 kb on - strand, within CA265_RS01255 at 310.928 kb on + strand, within CA265_RS01255 at 310.940 kb on - strand, within CA265_RS01255 at 310.949 kb on + strand, within CA265_RS01255 at 310.949 kb on + strand, within CA265_RS01255 at 310.972 kb on + strand, within CA265_RS01255 at 310.972 kb on + strand, within CA265_RS01255 at 311.007 kb on - strand, within CA265_RS01255 at 311.060 kb on - strand, within CA265_RS01255 at 311.137 kb on + strand, within CA265_RS01255 at 311.166 kb on - strand, within CA265_RS01255 at 311.180 kb on + strand, within CA265_RS01255 at 311.321 kb on + strand, within CA265_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 308,015 + CA265_RS01240 0.37 +1.0 308,032 - CA265_RS01240 0.39 -0.2 308,122 + CA265_RS01240 0.46 -0.6 308,123 - CA265_RS01240 0.47 +1.6 308,155 - CA265_RS01240 0.49 +0.0 308,161 + CA265_RS01240 0.50 -0.1 308,167 + CA265_RS01240 0.50 -1.2 308,168 - CA265_RS01240 0.50 +0.8 308,179 - CA265_RS01240 0.51 +0.5 308,233 - CA265_RS01240 0.56 -0.5 308,325 + CA265_RS01240 0.64 -0.1 308,326 - CA265_RS01240 0.64 +0.5 308,443 - CA265_RS01240 0.74 -0.1 308,490 - CA265_RS01240 0.78 +1.7 308,528 - CA265_RS01240 0.81 -0.1 308,561 - CA265_RS01240 0.84 +0.2 308,561 - CA265_RS01240 0.84 -0.4 308,564 + CA265_RS01240 0.84 +0.1 308,632 - -0.2 308,726 + +0.9 308,748 - +0.1 308,784 - +0.0 308,784 - +0.1 308,788 - -0.1 308,802 + +0.6 308,849 - -0.1 308,872 + +1.7 308,952 + -0.0 309,022 - -0.0 309,037 - -0.3 309,037 - +0.2 309,060 - +0.2 309,064 + CA265_RS01245 0.10 -0.2 309,076 - CA265_RS01245 0.11 -0.1 309,083 - CA265_RS01245 0.12 -0.2 309,124 + CA265_RS01245 0.14 +0.4 309,141 - CA265_RS01245 0.16 -0.6 309,141 - CA265_RS01245 0.16 +1.4 309,214 - CA265_RS01245 0.21 +0.9 309,228 + CA265_RS01245 0.22 +0.4 309,305 - CA265_RS01245 0.27 -0.3 309,311 - CA265_RS01245 0.28 +0.3 309,323 - CA265_RS01245 0.29 +0.0 309,328 + CA265_RS01245 0.29 +0.7 309,332 - CA265_RS01245 0.29 -1.0 309,332 - CA265_RS01245 0.29 -0.3 309,336 + CA265_RS01245 0.30 -0.2 309,336 + CA265_RS01245 0.30 +0.4 309,337 - CA265_RS01245 0.30 -1.0 309,337 - CA265_RS01245 0.30 -0.3 309,348 + CA265_RS01245 0.30 -0.3 309,349 - CA265_RS01245 0.30 +0.0 309,349 - CA265_RS01245 0.30 +0.3 309,352 + CA265_RS01245 0.31 +1.1 309,383 - CA265_RS01245 0.33 -0.8 309,383 - CA265_RS01245 0.33 -0.2 309,385 - CA265_RS01245 0.33 +0.7 309,453 - CA265_RS01245 0.38 +0.6 309,466 + CA265_RS01245 0.39 +0.5 309,466 + CA265_RS01245 0.39 +0.4 309,494 - CA265_RS01245 0.41 +0.2 309,613 - CA265_RS01245 0.49 +0.4 309,613 - CA265_RS01245 0.49 +0.2 309,639 - CA265_RS01245 0.51 -0.7 309,643 - CA265_RS01245 0.51 +0.1 309,643 - CA265_RS01245 0.51 -0.6 309,645 + CA265_RS01245 0.52 +0.1 309,677 + CA265_RS01245 0.54 -0.2 309,679 + CA265_RS01245 0.54 -0.1 309,680 - CA265_RS01245 0.54 +0.7 309,787 + CA265_RS01245 0.62 +1.0 310,029 + CA265_RS01245 0.79 -0.2 310,143 + CA265_RS01245 0.87 +0.8 310,144 - CA265_RS01245 0.87 +0.3 310,182 + CA265_RS01245 0.90 +0.3 310,209 + +0.1 310,209 + -1.7 310,303 - +0.0 310,303 - -0.0 310,311 + -0.3 310,322 + -0.4 310,323 - -0.5 310,356 + -0.1 310,357 - +0.1 310,357 - +0.8 310,357 - -0.9 310,357 - -1.0 310,362 + -0.4 310,363 - +0.1 310,425 - CA265_RS01250 0.22 -0.7 310,486 - CA265_RS01250 0.36 -0.1 310,490 + CA265_RS01250 0.37 -0.0 310,491 - CA265_RS01250 0.37 -0.5 310,491 - CA265_RS01250 0.37 +0.3 310,502 - CA265_RS01250 0.40 -0.6 310,515 + CA265_RS01250 0.43 +0.3 310,675 - CA265_RS01250 0.80 +0.3 310,681 + CA265_RS01250 0.81 -0.8 310,682 - CA265_RS01250 0.81 -0.3 310,850 - -0.9 310,887 + CA265_RS01255 0.13 +1.2 310,887 + CA265_RS01255 0.13 +1.2 310,887 + CA265_RS01255 0.13 -0.1 310,888 - CA265_RS01255 0.13 +0.6 310,888 - CA265_RS01255 0.13 -0.1 310,888 - CA265_RS01255 0.13 +0.6 310,928 + CA265_RS01255 0.17 -0.3 310,940 - CA265_RS01255 0.18 +0.0 310,949 + CA265_RS01255 0.19 +0.4 310,949 + CA265_RS01255 0.19 +0.0 310,972 + CA265_RS01255 0.22 +0.3 310,972 + CA265_RS01255 0.22 -0.2 311,007 - CA265_RS01255 0.25 -0.6 311,060 - CA265_RS01255 0.31 +0.4 311,137 + CA265_RS01255 0.38 -0.0 311,166 - CA265_RS01255 0.41 +0.4 311,180 + CA265_RS01255 0.43 -0.7 311,321 + CA265_RS01255 0.57 -0.8
Or see this region's nucleotide sequence