Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14050

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14045 and BWI76_RS14050 are separated by 14 nucleotidesBWI76_RS14050 and BWI76_RS14055 are separated by 184 nucleotides BWI76_RS14045: BWI76_RS14045 - oxidoreductase, at 2,934,982 to 2,936,154 _RS14045 BWI76_RS14050: BWI76_RS14050 - AP endonuclease, family 2, at 2,936,169 to 2,937,092 _RS14050 BWI76_RS14055: BWI76_RS14055 - LacI family transcriptional regulator, at 2,937,277 to 2,938,311 _RS14055 Position (kb) 2936 2937 2938Strain fitness (log2 ratio) -1 0 1at 2935.388 kb on - strand, within BWI76_RS14045at 2936.221 kb on - strandat 2936.408 kb on + strand, within BWI76_RS14050at 2936.855 kb on + strand, within BWI76_RS14050at 2937.427 kb on + strand, within BWI76_RS14055at 2937.617 kb on - strand, within BWI76_RS14055at 2937.626 kb on + strand, within BWI76_RS14055at 2937.671 kb on - strandat 2937.853 kb on + strand, within BWI76_RS14055at 2937.856 kb on + strand, within BWI76_RS14055at 2937.863 kb on - strand, within BWI76_RS14055at 2937.888 kb on - strand, within BWI76_RS14055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,935,388 - BWI76_RS14045 0.35 -0.6
2,936,221 - -1.0
2,936,408 + BWI76_RS14050 0.26 -1.4
2,936,855 + BWI76_RS14050 0.74 -1.2
2,937,427 + BWI76_RS14055 0.14 +0.1
2,937,617 - BWI76_RS14055 0.33 +0.4
2,937,626 + BWI76_RS14055 0.34 -0.6
2,937,671 - -0.6
2,937,853 + BWI76_RS14055 0.56 +0.4
2,937,856 + BWI76_RS14055 0.56 +0.1
2,937,863 - BWI76_RS14055 0.57 -1.2
2,937,888 - BWI76_RS14055 0.59 +1.4

Or see this region's nucleotide sequence