Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07305

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07295 and BWI76_RS07300 overlap by 4 nucleotidesBWI76_RS07300 and BWI76_RS07305 are separated by 146 nucleotidesBWI76_RS07305 and BWI76_RS07310 are separated by 30 nucleotides BWI76_RS07295: BWI76_RS07295 - 6-phospho-beta-glucosidase, at 1,535,676 to 1,537,100 _RS07295 BWI76_RS07300: BWI76_RS07300 - antitermination protein BlgG, at 1,537,097 to 1,537,936 _RS07300 BWI76_RS07305: BWI76_RS07305 - sucrose operon repressor, at 1,538,083 to 1,539,087 _RS07305 BWI76_RS07310: BWI76_RS07310 - sucrose-6-phosphate hydrolase, at 1,539,118 to 1,540,518 _RS07310 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1537.184 kb on + strand, within BWI76_RS07300at 1537.280 kb on - strand, within BWI76_RS07300at 1537.280 kb on - strand, within BWI76_RS07300at 1537.377 kb on + strand, within BWI76_RS07300at 1537.588 kb on + strand, within BWI76_RS07300at 1537.658 kb on + strand, within BWI76_RS07300at 1537.665 kb on + strand, within BWI76_RS07300at 1537.732 kb on + strand, within BWI76_RS07300at 1537.863 kb on + strandat 1537.899 kb on + strandat 1537.949 kb on - strandat 1538.138 kb on - strandat 1538.412 kb on - strand, within BWI76_RS07305at 1538.461 kb on + strand, within BWI76_RS07305at 1538.597 kb on + strand, within BWI76_RS07305at 1538.667 kb on + strand, within BWI76_RS07305at 1538.667 kb on + strand, within BWI76_RS07305at 1538.801 kb on - strand, within BWI76_RS07305at 1538.907 kb on + strand, within BWI76_RS07305at 1538.951 kb on + strand, within BWI76_RS07305at 1538.999 kb on - strandat 1539.827 kb on + strand, within BWI76_RS07310at 1539.831 kb on - strand, within BWI76_RS07310at 1539.855 kb on + strand, within BWI76_RS07310at 1539.958 kb on - strand, within BWI76_RS07310

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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1,537,184 + BWI76_RS07300 0.10 +0.4
1,537,280 - BWI76_RS07300 0.22 +0.5
1,537,280 - BWI76_RS07300 0.22 +0.4
1,537,377 + BWI76_RS07300 0.33 -0.3
1,537,588 + BWI76_RS07300 0.58 -0.5
1,537,658 + BWI76_RS07300 0.67 +0.1
1,537,665 + BWI76_RS07300 0.68 +2.8
1,537,732 + BWI76_RS07300 0.76 +1.6
1,537,863 + -0.4
1,537,899 + +0.4
1,537,949 - +1.1
1,538,138 - -2.6
1,538,412 - BWI76_RS07305 0.33 -1.9
1,538,461 + BWI76_RS07305 0.38 -1.8
1,538,597 + BWI76_RS07305 0.51 -1.6
1,538,667 + BWI76_RS07305 0.58 -2.2
1,538,667 + BWI76_RS07305 0.58 -0.5
1,538,801 - BWI76_RS07305 0.71 -1.5
1,538,907 + BWI76_RS07305 0.82 -2.5
1,538,951 + BWI76_RS07305 0.86 -0.4
1,538,999 - -1.2
1,539,827 + BWI76_RS07310 0.51 -0.2
1,539,831 - BWI76_RS07310 0.51 -0.1
1,539,855 + BWI76_RS07310 0.53 -0.4
1,539,958 - BWI76_RS07310 0.60 +0.1

Or see this region's nucleotide sequence