Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30425 and AO356_30430 are separated by 410 nucleotides AO356_30430 and AO356_30435 are separated by 119 nucleotides
AO356_30425: AO356_30425 - pyrroloquinoline quinone biosynthesis protein PqqE, at 7,102,358 to 7,103,527
_30425
AO356_30430: AO356_30430 - hypothetical protein, at 7,103,938 to 7,104,333
_30430
AO356_30435: AO356_30435 - multidrug transporter, at 7,104,453 to 7,105,877
_30435
Position (kb) 7103
7104
7105 Strain fitness (log2 ratio) -1
0
1 at 7103.405 kb on - strand, within AO356_30425 at 7103.405 kb on - strand, within AO356_30425 at 7103.407 kb on + strand, within AO356_30425 at 7103.408 kb on - strand, within AO356_30425 at 7103.427 kb on + strand at 7103.601 kb on - strand at 7103.664 kb on - strand at 7103.685 kb on - strand at 7103.866 kb on - strand at 7103.877 kb on + strand at 7103.881 kb on + strand at 7103.902 kb on + strand at 7103.938 kb on - strand at 7103.965 kb on - strand at 7103.973 kb on - strand at 7104.015 kb on + strand, within AO356_30430 at 7104.015 kb on + strand, within AO356_30430 at 7104.135 kb on + strand, within AO356_30430 at 7104.152 kb on + strand, within AO356_30430 at 7104.368 kb on + strand at 7104.372 kb on + strand at 7104.373 kb on - strand at 7104.380 kb on - strand at 7104.462 kb on - strand at 7104.641 kb on - strand, within AO356_30435 at 7104.643 kb on + strand, within AO356_30435 at 7104.643 kb on + strand, within AO356_30435 at 7104.644 kb on - strand, within AO356_30435 at 7104.644 kb on - strand, within AO356_30435 at 7104.747 kb on - strand, within AO356_30435 at 7104.793 kb on + strand, within AO356_30435 at 7104.803 kb on + strand, within AO356_30435 at 7104.935 kb on + strand, within AO356_30435 at 7104.936 kb on - strand, within AO356_30435 at 7104.965 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.002 kb on + strand, within AO356_30435 at 7105.003 kb on - strand, within AO356_30435 at 7105.003 kb on - strand, within AO356_30435 at 7105.003 kb on - strand, within AO356_30435 at 7105.003 kb on - strand, within AO356_30435 at 7105.005 kb on + strand, within AO356_30435 at 7105.005 kb on + strand, within AO356_30435 at 7105.005 kb on + strand, within AO356_30435 at 7105.006 kb on - strand, within AO356_30435 at 7105.006 kb on - strand, within AO356_30435 at 7105.006 kb on - strand, within AO356_30435 at 7105.006 kb on - strand, within AO356_30435 at 7105.006 kb on - strand, within AO356_30435 at 7105.035 kb on - strand, within AO356_30435 at 7105.051 kb on - strand, within AO356_30435 at 7105.162 kb on + strand, within AO356_30435 at 7105.163 kb on - strand, within AO356_30435 at 7105.163 kb on - strand, within AO356_30435 at 7105.163 kb on - strand, within AO356_30435 at 7105.276 kb on + strand, within AO356_30435 at 7105.289 kb on + strand, within AO356_30435 at 7105.290 kb on - strand, within AO356_30435 at 7105.290 kb on - strand, within AO356_30435 at 7105.290 kb on - strand, within AO356_30435
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 7,103,405 - AO356_30425 0.89 +0.8 7,103,405 - AO356_30425 0.89 +0.3 7,103,407 + AO356_30425 0.90 +0.9 7,103,408 - AO356_30425 0.90 -1.0 7,103,427 + +0.3 7,103,601 - -0.4 7,103,664 - +0.4 7,103,685 - -0.4 7,103,866 - +0.2 7,103,877 + -0.3 7,103,881 + +0.2 7,103,902 + -0.4 7,103,938 - -0.8 7,103,965 - -0.9 7,103,973 - +0.8 7,104,015 + AO356_30430 0.19 -1.6 7,104,015 + AO356_30430 0.19 +0.2 7,104,135 + AO356_30430 0.50 -1.4 7,104,152 + AO356_30430 0.54 -1.3 7,104,368 + +0.2 7,104,372 + +0.7 7,104,373 - +0.8 7,104,380 - -0.6 7,104,462 - -1.7 7,104,641 - AO356_30435 0.13 -0.3 7,104,643 + AO356_30435 0.13 -1.1 7,104,643 + AO356_30435 0.13 +0.0 7,104,644 - AO356_30435 0.13 -0.4 7,104,644 - AO356_30435 0.13 +0.9 7,104,747 - AO356_30435 0.21 +0.8 7,104,793 + AO356_30435 0.24 +0.4 7,104,803 + AO356_30435 0.25 -0.7 7,104,935 + AO356_30435 0.34 +0.7 7,104,936 - AO356_30435 0.34 +0.2 7,104,965 + AO356_30435 0.36 -0.2 7,105,002 + AO356_30435 0.39 -0.1 7,105,002 + AO356_30435 0.39 -0.2 7,105,002 + AO356_30435 0.39 +0.8 7,105,002 + AO356_30435 0.39 +0.1 7,105,002 + AO356_30435 0.39 -1.6 7,105,002 + AO356_30435 0.39 +0.0 7,105,003 - AO356_30435 0.39 +0.2 7,105,003 - AO356_30435 0.39 +0.9 7,105,003 - AO356_30435 0.39 -0.1 7,105,003 - AO356_30435 0.39 -0.1 7,105,005 + AO356_30435 0.39 -0.9 7,105,005 + AO356_30435 0.39 +0.3 7,105,005 + AO356_30435 0.39 -0.1 7,105,006 - AO356_30435 0.39 +0.3 7,105,006 - AO356_30435 0.39 +0.5 7,105,006 - AO356_30435 0.39 -0.2 7,105,006 - AO356_30435 0.39 +0.3 7,105,006 - AO356_30435 0.39 +0.3 7,105,035 - AO356_30435 0.41 +0.1 7,105,051 - AO356_30435 0.42 -0.2 7,105,162 + AO356_30435 0.50 -1.1 7,105,163 - AO356_30435 0.50 -0.1 7,105,163 - AO356_30435 0.50 +1.4 7,105,163 - AO356_30435 0.50 -0.9 7,105,276 + AO356_30435 0.58 +1.3 7,105,289 + AO356_30435 0.59 -1.1 7,105,290 - AO356_30435 0.59 -0.7 7,105,290 - AO356_30435 0.59 -0.1 7,105,290 - AO356_30435 0.59 +0.7
Or see this region's nucleotide sequence