Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_28570 and AO356_28575 are separated by 21 nucleotides AO356_28575 and AO356_28580 overlap by 4 nucleotides AO356_28580 and AO356_28585 are separated by 32 nucleotides
AO356_28570: AO356_28570 - ABC transporter substrate-binding protein, at 6,641,076 to 6,642,350
_28570
AO356_28575: AO356_28575 - ABC transporter permease, at 6,642,372 to 6,643,334
_28575
AO356_28580: AO356_28580 - sugar ABC transporter permease, at 6,643,331 to 6,644,173
_28580
AO356_28585: AO356_28585 - ABC transporter, at 6,644,206 to 6,645,345
_28585
Position (kb)
6642
6643
6644 Strain fitness (log2 ratio)
-1
0
1
2
3 at 6641.503 kb on - strand, within AO356_28570 at 6641.505 kb on + strand, within AO356_28570 at 6641.629 kb on - strand, within AO356_28570 at 6641.629 kb on - strand, within AO356_28570 at 6641.630 kb on + strand, within AO356_28570 at 6641.630 kb on + strand, within AO356_28570 at 6641.630 kb on + strand, within AO356_28570 at 6641.631 kb on - strand, within AO356_28570 at 6641.631 kb on - strand, within AO356_28570 at 6641.631 kb on - strand, within AO356_28570 at 6641.631 kb on - strand, within AO356_28570 at 6641.631 kb on - strand, within AO356_28570 at 6641.632 kb on + strand, within AO356_28570 at 6641.633 kb on - strand, within AO356_28570 at 6641.815 kb on - strand, within AO356_28570 at 6641.880 kb on + strand, within AO356_28570 at 6641.880 kb on + strand, within AO356_28570 at 6641.881 kb on - strand, within AO356_28570 at 6641.881 kb on - strand, within AO356_28570 at 6641.881 kb on - strand, within AO356_28570 at 6642.052 kb on - strand, within AO356_28570 at 6642.100 kb on - strand, within AO356_28570 at 6642.156 kb on + strand, within AO356_28570 at 6642.159 kb on + strand, within AO356_28570 at 6642.409 kb on - strand at 6642.522 kb on - strand, within AO356_28575 at 6643.152 kb on + strand, within AO356_28575 at 6643.152 kb on + strand, within AO356_28575 at 6643.152 kb on + strand, within AO356_28575 at 6643.153 kb on - strand, within AO356_28575 at 6643.153 kb on - strand, within AO356_28575 at 6643.153 kb on - strand, within AO356_28575 at 6643.153 kb on - strand, within AO356_28575 at 6643.153 kb on - strand, within AO356_28575 at 6643.425 kb on - strand, within AO356_28580 at 6643.435 kb on - strand, within AO356_28580 at 6643.740 kb on - strand, within AO356_28580
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 6,641,503 - AO356_28570 0.33 +0.5 6,641,505 + AO356_28570 0.34 +0.8 6,641,629 - AO356_28570 0.43 +0.4 6,641,629 - AO356_28570 0.43 +0.4 6,641,630 + AO356_28570 0.43 +3.7 6,641,630 + AO356_28570 0.43 +0.9 6,641,630 + AO356_28570 0.43 +1.5 6,641,631 - AO356_28570 0.44 +0.5 6,641,631 - AO356_28570 0.44 +0.0 6,641,631 - AO356_28570 0.44 +1.2 6,641,631 - AO356_28570 0.44 +1.2 6,641,631 - AO356_28570 0.44 +0.8 6,641,632 + AO356_28570 0.44 +0.6 6,641,633 - AO356_28570 0.44 +0.1 6,641,815 - AO356_28570 0.58 -0.4 6,641,880 + AO356_28570 0.63 +0.8 6,641,880 + AO356_28570 0.63 -0.2 6,641,881 - AO356_28570 0.63 -0.3 6,641,881 - AO356_28570 0.63 +1.1 6,641,881 - AO356_28570 0.63 +0.8 6,642,052 - AO356_28570 0.77 -0.2 6,642,100 - AO356_28570 0.80 +0.9 6,642,156 + AO356_28570 0.85 -1.2 6,642,159 + AO356_28570 0.85 +0.4 6,642,409 - +1.2 6,642,522 - AO356_28575 0.16 +0.1 6,643,152 + AO356_28575 0.81 -0.7 6,643,152 + AO356_28575 0.81 -1.6 6,643,152 + AO356_28575 0.81 -1.2 6,643,153 - AO356_28575 0.81 +0.0 6,643,153 - AO356_28575 0.81 -0.6 6,643,153 - AO356_28575 0.81 -0.3 6,643,153 - AO356_28575 0.81 +0.1 6,643,153 - AO356_28575 0.81 -1.2 6,643,425 - AO356_28580 0.11 -0.7 6,643,435 - AO356_28580 0.12 -1.1 6,643,740 - AO356_28580 0.49 -1.0
Or see this region's nucleotide sequence