Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28575

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28570 and AO356_28575 are separated by 21 nucleotidesAO356_28575 and AO356_28580 overlap by 4 nucleotidesAO356_28580 and AO356_28585 are separated by 32 nucleotides AO356_28570: AO356_28570 - ABC transporter substrate-binding protein, at 6,641,076 to 6,642,350 _28570 AO356_28575: AO356_28575 - ABC transporter permease, at 6,642,372 to 6,643,334 _28575 AO356_28580: AO356_28580 - sugar ABC transporter permease, at 6,643,331 to 6,644,173 _28580 AO356_28585: AO356_28585 - ABC transporter, at 6,644,206 to 6,645,345 _28585 Position (kb) 6642 6643 6644Strain fitness (log2 ratio) -1 0 1 2 3at 6641.503 kb on - strand, within AO356_28570at 6641.505 kb on + strand, within AO356_28570at 6641.629 kb on - strand, within AO356_28570at 6641.629 kb on - strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.632 kb on + strand, within AO356_28570at 6641.633 kb on - strand, within AO356_28570at 6641.815 kb on - strand, within AO356_28570at 6641.880 kb on + strand, within AO356_28570at 6641.880 kb on + strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6642.052 kb on - strand, within AO356_28570at 6642.100 kb on - strand, within AO356_28570at 6642.156 kb on + strand, within AO356_28570at 6642.159 kb on + strand, within AO356_28570at 6642.409 kb on - strandat 6642.522 kb on - strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.425 kb on - strand, within AO356_28580at 6643.435 kb on - strand, within AO356_28580at 6643.740 kb on - strand, within AO356_28580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
remove
6,641,503 - AO356_28570 0.33 +0.5
6,641,505 + AO356_28570 0.34 +0.8
6,641,629 - AO356_28570 0.43 +0.4
6,641,629 - AO356_28570 0.43 +0.4
6,641,630 + AO356_28570 0.43 +3.7
6,641,630 + AO356_28570 0.43 +0.9
6,641,630 + AO356_28570 0.43 +1.5
6,641,631 - AO356_28570 0.44 +0.5
6,641,631 - AO356_28570 0.44 +0.0
6,641,631 - AO356_28570 0.44 +1.2
6,641,631 - AO356_28570 0.44 +1.2
6,641,631 - AO356_28570 0.44 +0.8
6,641,632 + AO356_28570 0.44 +0.6
6,641,633 - AO356_28570 0.44 +0.1
6,641,815 - AO356_28570 0.58 -0.4
6,641,880 + AO356_28570 0.63 +0.8
6,641,880 + AO356_28570 0.63 -0.2
6,641,881 - AO356_28570 0.63 -0.3
6,641,881 - AO356_28570 0.63 +1.1
6,641,881 - AO356_28570 0.63 +0.8
6,642,052 - AO356_28570 0.77 -0.2
6,642,100 - AO356_28570 0.80 +0.9
6,642,156 + AO356_28570 0.85 -1.2
6,642,159 + AO356_28570 0.85 +0.4
6,642,409 - +1.2
6,642,522 - AO356_28575 0.16 +0.1
6,643,152 + AO356_28575 0.81 -0.7
6,643,152 + AO356_28575 0.81 -1.6
6,643,152 + AO356_28575 0.81 -1.2
6,643,153 - AO356_28575 0.81 +0.0
6,643,153 - AO356_28575 0.81 -0.6
6,643,153 - AO356_28575 0.81 -0.3
6,643,153 - AO356_28575 0.81 +0.1
6,643,153 - AO356_28575 0.81 -1.2
6,643,425 - AO356_28580 0.11 -0.7
6,643,435 - AO356_28580 0.12 -1.1
6,643,740 - AO356_28580 0.49 -1.0

Or see this region's nucleotide sequence