Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27685

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27675 and AO356_27680 are separated by 10 nucleotidesAO356_27680 and AO356_27685 are separated by 39 nucleotidesAO356_27685 and AO356_27690 are separated by 15 nucleotides AO356_27675: AO356_27675 - sugar ABC transporter permease, at 6,318,521 to 6,319,456 _27675 AO356_27680: AO356_27680 - sugar ABC transporter permease, at 6,319,467 to 6,320,297 _27680 AO356_27685: AO356_27685 - ABC transporter ATP-binding protein, at 6,320,337 to 6,321,440 _27685 AO356_27690: AO356_27690 - mannitol dehydrogenase, at 6,321,456 to 6,322,937 _27690 Position (kb) 6320 6321 6322Strain fitness (log2 ratio) -2 -1 0 1 2at 6319.387 kb on - strandat 6319.642 kb on - strand, within AO356_27680at 6319.668 kb on + strand, within AO356_27680at 6319.669 kb on - strand, within AO356_27680at 6319.750 kb on - strand, within AO356_27680at 6319.764 kb on + strand, within AO356_27680at 6319.764 kb on + strand, within AO356_27680at 6319.764 kb on + strand, within AO356_27680at 6319.765 kb on - strand, within AO356_27680at 6319.765 kb on - strand, within AO356_27680at 6319.848 kb on + strand, within AO356_27680at 6319.887 kb on - strand, within AO356_27680at 6319.887 kb on - strand, within AO356_27680at 6319.906 kb on - strand, within AO356_27680at 6319.906 kb on - strand, within AO356_27680at 6319.944 kb on + strand, within AO356_27680at 6319.945 kb on - strand, within AO356_27680at 6319.945 kb on - strand, within AO356_27680at 6319.950 kb on + strand, within AO356_27680at 6320.029 kb on + strand, within AO356_27680at 6320.164 kb on - strand, within AO356_27680at 6320.164 kb on - strand, within AO356_27680at 6320.164 kb on - strand, within AO356_27680at 6320.296 kb on - strandat 6320.305 kb on + strandat 6320.587 kb on - strand, within AO356_27685at 6320.596 kb on - strand, within AO356_27685at 6320.901 kb on + strand, within AO356_27685at 6320.901 kb on + strand, within AO356_27685at 6320.902 kb on - strand, within AO356_27685at 6320.902 kb on - strand, within AO356_27685at 6320.902 kb on - strand, within AO356_27685at 6320.902 kb on - strand, within AO356_27685at 6321.001 kb on - strand, within AO356_27685at 6321.413 kb on - strandat 6321.499 kb on + strandat 6321.585 kb on + strandat 6321.585 kb on + strandat 6321.585 kb on + strandat 6321.586 kb on - strandat 6321.586 kb on - strandat 6321.589 kb on - strandat 6321.696 kb on + strand, within AO356_27690at 6321.697 kb on - strand, within AO356_27690at 6321.862 kb on - strand, within AO356_27690at 6322.378 kb on - strand, within AO356_27690

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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6,319,387 - -0.1
6,319,642 - AO356_27680 0.21 +0.7
6,319,668 + AO356_27680 0.24 -1.1
6,319,669 - AO356_27680 0.24 +0.5
6,319,750 - AO356_27680 0.34 +0.7
6,319,764 + AO356_27680 0.36 -1.8
6,319,764 + AO356_27680 0.36 -0.7
6,319,764 + AO356_27680 0.36 +0.1
6,319,765 - AO356_27680 0.36 +1.2
6,319,765 - AO356_27680 0.36 -0.0
6,319,848 + AO356_27680 0.46 +0.2
6,319,887 - AO356_27680 0.51 +0.2
6,319,887 - AO356_27680 0.51 +0.3
6,319,906 - AO356_27680 0.53 +0.7
6,319,906 - AO356_27680 0.53 +0.8
6,319,944 + AO356_27680 0.57 -0.5
6,319,945 - AO356_27680 0.58 +1.9
6,319,945 - AO356_27680 0.58 -0.2
6,319,950 + AO356_27680 0.58 +0.1
6,320,029 + AO356_27680 0.68 +1.0
6,320,164 - AO356_27680 0.84 +0.3
6,320,164 - AO356_27680 0.84 +0.5
6,320,164 - AO356_27680 0.84 -2.1
6,320,296 - +0.2
6,320,305 + +1.3
6,320,587 - AO356_27685 0.23 +0.0
6,320,596 - AO356_27685 0.23 +0.3
6,320,901 + AO356_27685 0.51 +0.3
6,320,901 + AO356_27685 0.51 +1.6
6,320,902 - AO356_27685 0.51 +1.0
6,320,902 - AO356_27685 0.51 -0.4
6,320,902 - AO356_27685 0.51 +2.1
6,320,902 - AO356_27685 0.51 -0.0
6,321,001 - AO356_27685 0.60 +0.7
6,321,413 - -1.2
6,321,499 + +0.3
6,321,585 + -1.0
6,321,585 + +0.7
6,321,585 + +0.6
6,321,586 - +1.2
6,321,586 - -0.1
6,321,589 - +0.0
6,321,696 + AO356_27690 0.16 -0.6
6,321,697 - AO356_27690 0.16 +1.2
6,321,862 - AO356_27690 0.27 +0.8
6,322,378 - AO356_27690 0.62 +1.9

Or see this region's nucleotide sequence