Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27675 and AO356_27680 are separated by 10 nucleotides AO356_27680 and AO356_27685 are separated by 39 nucleotides AO356_27685 and AO356_27690 are separated by 15 nucleotides
AO356_27675: AO356_27675 - sugar ABC transporter permease, at 6,318,521 to 6,319,456
_27675
AO356_27680: AO356_27680 - sugar ABC transporter permease, at 6,319,467 to 6,320,297
_27680
AO356_27685: AO356_27685 - ABC transporter ATP-binding protein, at 6,320,337 to 6,321,440
_27685
AO356_27690: AO356_27690 - mannitol dehydrogenase, at 6,321,456 to 6,322,937
_27690
Position (kb)
6320
6321
6322 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6319.387 kb on - strand at 6319.642 kb on - strand, within AO356_27680 at 6319.668 kb on + strand, within AO356_27680 at 6319.669 kb on - strand, within AO356_27680 at 6319.750 kb on - strand, within AO356_27680 at 6319.764 kb on + strand, within AO356_27680 at 6319.764 kb on + strand, within AO356_27680 at 6319.764 kb on + strand, within AO356_27680 at 6319.765 kb on - strand, within AO356_27680 at 6319.765 kb on - strand, within AO356_27680 at 6319.848 kb on + strand, within AO356_27680 at 6319.887 kb on - strand, within AO356_27680 at 6319.887 kb on - strand, within AO356_27680 at 6319.906 kb on - strand, within AO356_27680 at 6319.906 kb on - strand, within AO356_27680 at 6319.944 kb on + strand, within AO356_27680 at 6319.945 kb on - strand, within AO356_27680 at 6319.945 kb on - strand, within AO356_27680 at 6319.950 kb on + strand, within AO356_27680 at 6320.029 kb on + strand, within AO356_27680 at 6320.164 kb on - strand, within AO356_27680 at 6320.164 kb on - strand, within AO356_27680 at 6320.164 kb on - strand, within AO356_27680 at 6320.296 kb on - strand at 6320.305 kb on + strand at 6320.587 kb on - strand, within AO356_27685 at 6320.596 kb on - strand, within AO356_27685 at 6320.901 kb on + strand, within AO356_27685 at 6320.901 kb on + strand, within AO356_27685 at 6320.902 kb on - strand, within AO356_27685 at 6320.902 kb on - strand, within AO356_27685 at 6320.902 kb on - strand, within AO356_27685 at 6320.902 kb on - strand, within AO356_27685 at 6321.001 kb on - strand, within AO356_27685 at 6321.413 kb on - strand at 6321.499 kb on + strand at 6321.585 kb on + strand at 6321.585 kb on + strand at 6321.585 kb on + strand at 6321.586 kb on - strand at 6321.586 kb on - strand at 6321.589 kb on - strand at 6321.696 kb on + strand, within AO356_27690 at 6321.697 kb on - strand, within AO356_27690 at 6321.862 kb on - strand, within AO356_27690 at 6322.378 kb on - strand, within AO356_27690
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 6,319,387 - -0.1 6,319,642 - AO356_27680 0.21 +0.7 6,319,668 + AO356_27680 0.24 -1.1 6,319,669 - AO356_27680 0.24 +0.5 6,319,750 - AO356_27680 0.34 +0.7 6,319,764 + AO356_27680 0.36 -1.8 6,319,764 + AO356_27680 0.36 -0.7 6,319,764 + AO356_27680 0.36 +0.1 6,319,765 - AO356_27680 0.36 +1.2 6,319,765 - AO356_27680 0.36 -0.0 6,319,848 + AO356_27680 0.46 +0.2 6,319,887 - AO356_27680 0.51 +0.2 6,319,887 - AO356_27680 0.51 +0.3 6,319,906 - AO356_27680 0.53 +0.7 6,319,906 - AO356_27680 0.53 +0.8 6,319,944 + AO356_27680 0.57 -0.5 6,319,945 - AO356_27680 0.58 +1.9 6,319,945 - AO356_27680 0.58 -0.2 6,319,950 + AO356_27680 0.58 +0.1 6,320,029 + AO356_27680 0.68 +1.0 6,320,164 - AO356_27680 0.84 +0.3 6,320,164 - AO356_27680 0.84 +0.5 6,320,164 - AO356_27680 0.84 -2.1 6,320,296 - +0.2 6,320,305 + +1.3 6,320,587 - AO356_27685 0.23 +0.0 6,320,596 - AO356_27685 0.23 +0.3 6,320,901 + AO356_27685 0.51 +0.3 6,320,901 + AO356_27685 0.51 +1.6 6,320,902 - AO356_27685 0.51 +1.0 6,320,902 - AO356_27685 0.51 -0.4 6,320,902 - AO356_27685 0.51 +2.1 6,320,902 - AO356_27685 0.51 -0.0 6,321,001 - AO356_27685 0.60 +0.7 6,321,413 - -1.2 6,321,499 + +0.3 6,321,585 + -1.0 6,321,585 + +0.7 6,321,585 + +0.6 6,321,586 - +1.2 6,321,586 - -0.1 6,321,589 - +0.0 6,321,696 + AO356_27690 0.16 -0.6 6,321,697 - AO356_27690 0.16 +1.2 6,321,862 - AO356_27690 0.27 +0.8 6,322,378 - AO356_27690 0.62 +1.9
Or see this region's nucleotide sequence