Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25115 and AO356_25120 are separated by 129 nucleotides AO356_25120 and AO356_25125 are separated by 93 nucleotides AO356_25125 and AO356_25130 are separated by 22 nucleotides AO356_25130 and AO356_25135 are separated by 140 nucleotides
AO356_25115: AO356_25115 - transcription factor, at 5,685,688 to 5,686,371
_25115
AO356_25120: AO356_25120 - hypothetical protein, at 5,686,501 to 5,686,830
_25120
AO356_25125: AO356_25125 - short-chain dehydrogenase, at 5,686,924 to 5,688,114
_25125
AO356_25130: AO356_25130 - hypothetical protein, at 5,688,137 to 5,688,577
_25130
AO356_25135: AO356_25135 - iron-sulfur cluster repair di-iron protein, at 5,688,718 to 5,689,392
_25135
Position (kb) 5686
5687
5688
5689 Strain fitness (log2 ratio) -1
0
1
2 at 5686.025 kb on + strand, within AO356_25115 at 5686.025 kb on + strand, within AO356_25115 at 5686.026 kb on - strand, within AO356_25115 at 5686.026 kb on - strand, within AO356_25115 at 5686.026 kb on - strand, within AO356_25115 at 5686.026 kb on - strand, within AO356_25115 at 5686.026 kb on - strand, within AO356_25115 at 5686.085 kb on + strand, within AO356_25115 at 5686.085 kb on + strand, within AO356_25115 at 5686.085 kb on + strand, within AO356_25115 at 5686.211 kb on + strand, within AO356_25115 at 5686.211 kb on + strand, within AO356_25115 at 5686.212 kb on - strand, within AO356_25115 at 5686.386 kb on + strand at 5686.387 kb on - strand at 5686.387 kb on - strand at 5686.387 kb on - strand at 5686.387 kb on - strand at 5686.394 kb on - strand at 5686.645 kb on + strand, within AO356_25120 at 5686.659 kb on - strand, within AO356_25120 at 5686.723 kb on + strand, within AO356_25120 at 5686.923 kb on + strand at 5686.923 kb on + strand at 5686.923 kb on + strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5686.924 kb on - strand at 5687.372 kb on + strand, within AO356_25125 at 5687.614 kb on + strand, within AO356_25125 at 5687.614 kb on + strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5687.615 kb on - strand, within AO356_25125 at 5688.055 kb on + strand at 5688.144 kb on - strand at 5688.215 kb on - strand, within AO356_25130 at 5688.324 kb on - strand, within AO356_25130 at 5688.458 kb on + strand, within AO356_25130 at 5688.459 kb on - strand, within AO356_25130 at 5688.563 kb on + strand at 5688.564 kb on - strand at 5688.564 kb on - strand at 5688.813 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135 at 5689.017 kb on - strand, within AO356_25135
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 5,686,025 + AO356_25115 0.49 -0.6 5,686,025 + AO356_25115 0.49 -0.8 5,686,026 - AO356_25115 0.49 +0.2 5,686,026 - AO356_25115 0.49 -0.4 5,686,026 - AO356_25115 0.49 -0.1 5,686,026 - AO356_25115 0.49 -0.2 5,686,026 - AO356_25115 0.49 +0.9 5,686,085 + AO356_25115 0.58 -0.1 5,686,085 + AO356_25115 0.58 -0.6 5,686,085 + AO356_25115 0.58 -0.3 5,686,211 + AO356_25115 0.76 +0.5 5,686,211 + AO356_25115 0.76 +0.7 5,686,212 - AO356_25115 0.77 +0.1 5,686,386 + -0.1 5,686,387 - +0.6 5,686,387 - +0.4 5,686,387 - -0.6 5,686,387 - +0.5 5,686,394 - -0.6 5,686,645 + AO356_25120 0.44 -0.6 5,686,659 - AO356_25120 0.48 +0.1 5,686,723 + AO356_25120 0.67 -0.5 5,686,923 + +1.0 5,686,923 + -0.7 5,686,923 + +0.0 5,686,924 - +0.5 5,686,924 - -0.4 5,686,924 - +1.0 5,686,924 - -0.2 5,686,924 - -0.9 5,686,924 - +1.1 5,686,924 - +0.5 5,687,372 + AO356_25125 0.38 +0.0 5,687,614 + AO356_25125 0.58 -0.5 5,687,614 + AO356_25125 0.58 -0.0 5,687,615 - AO356_25125 0.58 +0.1 5,687,615 - AO356_25125 0.58 +2.0 5,687,615 - AO356_25125 0.58 +1.4 5,687,615 - AO356_25125 0.58 +0.8 5,687,615 - AO356_25125 0.58 +0.2 5,687,615 - AO356_25125 0.58 +1.0 5,687,615 - AO356_25125 0.58 +1.4 5,688,055 + +1.5 5,688,144 - +0.7 5,688,215 - AO356_25130 0.18 +0.8 5,688,324 - AO356_25130 0.42 +0.4 5,688,458 + AO356_25130 0.73 +0.6 5,688,459 - AO356_25130 0.73 -0.4 5,688,563 + +0.7 5,688,564 - +0.2 5,688,564 - -1.6 5,688,813 - AO356_25135 0.14 -1.1 5,689,017 - AO356_25135 0.44 +0.5 5,689,017 - AO356_25135 0.44 +1.4 5,689,017 - AO356_25135 0.44 +1.0
Or see this region's nucleotide sequence