Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18880 and AO356_18885 are separated by 62 nucleotides AO356_18885 and AO356_18890 are separated by 92 nucleotides AO356_18890 and AO356_18895 are separated by 47 nucleotides
AO356_18880: AO356_18880 - MFS transporter, at 4,245,776 to 4,247,137
_18880
AO356_18885: AO356_18885 - pilus assembly protein PilZ, at 4,247,200 to 4,247,946
_18885
AO356_18890: AO356_18890 - flagellar biosynthesis protein FlgN, at 4,248,039 to 4,248,506
_18890
AO356_18895: AO356_18895 - flagellar biosynthesis anti-sigma factor FlgM, at 4,248,554 to 4,248,871
_18895
Position (kb) 4247
4248 Strain fitness (log2 ratio) -2
-1
0
1 at 4246.427 kb on + strand, within AO356_18880 at 4246.427 kb on + strand, within AO356_18880 at 4246.427 kb on + strand, within AO356_18880 at 4246.427 kb on + strand, within AO356_18880 at 4246.428 kb on - strand, within AO356_18880 at 4246.445 kb on + strand, within AO356_18880 at 4246.446 kb on - strand, within AO356_18880 at 4246.761 kb on + strand, within AO356_18880 at 4246.761 kb on + strand, within AO356_18880 at 4246.761 kb on + strand, within AO356_18880 at 4246.762 kb on - strand, within AO356_18880 at 4246.762 kb on - strand, within AO356_18880 at 4246.772 kb on + strand, within AO356_18880 at 4246.772 kb on + strand, within AO356_18880 at 4247.120 kb on - strand at 4247.146 kb on + strand at 4247.299 kb on + strand, within AO356_18885 at 4247.300 kb on - strand, within AO356_18885 at 4247.300 kb on - strand, within AO356_18885 at 4247.403 kb on - strand, within AO356_18885 at 4247.582 kb on + strand, within AO356_18885 at 4247.583 kb on - strand, within AO356_18885 at 4247.583 kb on - strand, within AO356_18885 at 4247.675 kb on - strand, within AO356_18885 at 4247.795 kb on + strand, within AO356_18885 at 4247.795 kb on + strand, within AO356_18885 at 4247.795 kb on + strand, within AO356_18885 at 4247.796 kb on - strand, within AO356_18885 at 4247.796 kb on - strand, within AO356_18885 at 4247.796 kb on - strand, within AO356_18885 at 4247.796 kb on - strand, within AO356_18885 at 4247.796 kb on - strand, within AO356_18885 at 4247.814 kb on + strand, within AO356_18885 at 4247.814 kb on + strand, within AO356_18885 at 4247.815 kb on - strand, within AO356_18885 at 4247.815 kb on - strand, within AO356_18885 at 4247.829 kb on + strand, within AO356_18885 at 4247.830 kb on - strand, within AO356_18885 at 4247.851 kb on - strand, within AO356_18885 at 4247.851 kb on - strand, within AO356_18885 at 4247.970 kb on + strand at 4247.970 kb on + strand at 4247.970 kb on + strand at 4247.970 kb on + strand at 4247.971 kb on - strand at 4248.017 kb on + strand at 4248.017 kb on + strand at 4248.018 kb on - strand at 4248.018 kb on - strand at 4248.438 kb on + strand, within AO356_18890 at 4248.438 kb on + strand, within AO356_18890 at 4248.438 kb on + strand, within AO356_18890 at 4248.523 kb on + strand at 4248.524 kb on - strand at 4248.524 kb on - strand at 4248.524 kb on - strand at 4248.937 kb on - strand at 4248.937 kb on - strand at 4248.946 kb on + strand at 4248.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 4,246,427 + AO356_18880 0.48 -0.0 4,246,427 + AO356_18880 0.48 +1.1 4,246,427 + AO356_18880 0.48 +1.4 4,246,427 + AO356_18880 0.48 -0.5 4,246,428 - AO356_18880 0.48 +0.2 4,246,445 + AO356_18880 0.49 +1.4 4,246,446 - AO356_18880 0.49 +0.9 4,246,761 + AO356_18880 0.72 +0.1 4,246,761 + AO356_18880 0.72 -2.1 4,246,761 + AO356_18880 0.72 -0.3 4,246,762 - AO356_18880 0.72 +1.2 4,246,762 - AO356_18880 0.72 -1.4 4,246,772 + AO356_18880 0.73 +1.2 4,246,772 + AO356_18880 0.73 +1.2 4,247,120 - +1.2 4,247,146 + -0.8 4,247,299 + AO356_18885 0.13 +0.6 4,247,300 - AO356_18885 0.13 -0.4 4,247,300 - AO356_18885 0.13 +1.4 4,247,403 - AO356_18885 0.27 +0.9 4,247,582 + AO356_18885 0.51 +0.3 4,247,583 - AO356_18885 0.51 -0.2 4,247,583 - AO356_18885 0.51 +0.7 4,247,675 - AO356_18885 0.64 +0.6 4,247,795 + AO356_18885 0.80 +0.2 4,247,795 + AO356_18885 0.80 +0.7 4,247,795 + AO356_18885 0.80 +0.6 4,247,796 - AO356_18885 0.80 +1.5 4,247,796 - AO356_18885 0.80 +0.6 4,247,796 - AO356_18885 0.80 +0.7 4,247,796 - AO356_18885 0.80 +0.6 4,247,796 - AO356_18885 0.80 +0.2 4,247,814 + AO356_18885 0.82 +1.4 4,247,814 + AO356_18885 0.82 +1.4 4,247,815 - AO356_18885 0.82 +0.3 4,247,815 - AO356_18885 0.82 -0.0 4,247,829 + AO356_18885 0.84 -1.3 4,247,830 - AO356_18885 0.84 +1.1 4,247,851 - AO356_18885 0.87 +0.4 4,247,851 - AO356_18885 0.87 -0.1 4,247,970 + -0.9 4,247,970 + +0.0 4,247,970 + +1.1 4,247,970 + +0.2 4,247,971 - -0.4 4,248,017 + -1.2 4,248,017 + +0.1 4,248,018 - +0.4 4,248,018 - +0.2 4,248,438 + AO356_18890 0.85 -0.4 4,248,438 + AO356_18890 0.85 -0.2 4,248,438 + AO356_18890 0.85 +1.1 4,248,523 + -1.4 4,248,524 - +0.5 4,248,524 - +0.0 4,248,524 - -1.4 4,248,937 - -0.9 4,248,937 - -0.5 4,248,946 + +0.3 4,248,946 + +1.6
Or see this region's nucleotide sequence