Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18770 and AO356_18775 are separated by 92 nucleotides AO356_18775 and AO356_18780 are separated by 184 nucleotides AO356_18780 and AO356_18785 are separated by 62 nucleotides AO356_18785 and AO356_18790 are separated by 107 nucleotides AO356_18790 and AO356_18795 are separated by 72 nucleotides AO356_18795 and AO356_18800 are separated by 40 nucleotides
AO356_18770: AO356_18770 - alanine--tRNA ligase, at 4,216,823 to 4,219,444
_18770
AO356_18775: AO356_18775 - aspartate kinase, at 4,219,537 to 4,220,778
_18775
AO356_18780: AO356_18780 - carbon storage regulator, at 4,220,963 to 4,221,151
_18780
AO356_18785: AO356_18785 - tRNA-Ser, at 4,221,214 to 4,221,304
_18785
AO356_18790: AO356_18790 - tRNA-Arg, at 4,221,412 to 4,221,488
_18790
AO356_18795: AO356_18795 - tRNA-Arg, at 4,221,561 to 4,221,637
_18795
AO356_18800: AO356_18800 - cell envelope protein SmpA, at 4,221,678 to 4,222,181
_18800
Position (kb) 4219
4220
4221 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4219.428 kb on + strand at 4219.428 kb on + strand at 4219.428 kb on + strand at 4219.428 kb on + strand at 4219.438 kb on + strand at 4219.442 kb on + strand at 4219.469 kb on + strand at 4220.262 kb on + strand, within AO356_18775 at 4220.265 kb on + strand, within AO356_18775 at 4220.265 kb on + strand, within AO356_18775 at 4220.776 kb on + strand at 4220.777 kb on - strand at 4220.777 kb on - strand at 4220.777 kb on - strand at 4220.777 kb on - strand at 4220.867 kb on + strand at 4220.867 kb on + strand at 4220.868 kb on - strand at 4220.868 kb on - strand at 4220.868 kb on - strand at 4220.870 kb on + strand at 4220.870 kb on + strand at 4220.870 kb on + strand at 4220.870 kb on + strand at 4220.870 kb on + strand at 4220.870 kb on + strand at 4220.871 kb on - strand at 4220.871 kb on - strand at 4220.871 kb on - strand at 4220.871 kb on - strand at 4220.871 kb on - strand at 4220.878 kb on + strand at 4220.900 kb on + strand at 4220.900 kb on + strand at 4220.900 kb on + strand at 4220.901 kb on - strand at 4220.937 kb on + strand at 4220.937 kb on + strand at 4220.937 kb on + strand at 4220.937 kb on + strand at 4220.937 kb on + strand at 4220.938 kb on - strand at 4220.938 kb on - strand at 4220.962 kb on + strand at 4220.962 kb on + strand at 4220.962 kb on + strand at 4220.962 kb on + strand at 4220.962 kb on + strand at 4221.001 kb on + strand, within AO356_18780 at 4221.090 kb on + strand, within AO356_18780 at 4221.166 kb on + strand at 4221.491 kb on + strand at 4221.516 kb on + strand at 4221.545 kb on + strand at 4221.547 kb on + strand at 4221.658 kb on + strand at 4221.748 kb on + strand, within AO356_18800 at 4221.748 kb on + strand, within AO356_18800 at 4221.748 kb on + strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.749 kb on - strand, within AO356_18800 at 4221.752 kb on + strand, within AO356_18800 at 4221.752 kb on + strand, within AO356_18800 at 4221.752 kb on + strand, within AO356_18800 at 4221.752 kb on + strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.753 kb on - strand, within AO356_18800 at 4221.754 kb on + strand, within AO356_18800 at 4221.755 kb on - strand, within AO356_18800 at 4221.755 kb on - strand, within AO356_18800
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 4,219,428 + -1.0 4,219,428 + +0.6 4,219,428 + +0.7 4,219,428 + +0.9 4,219,438 + -1.0 4,219,442 + -0.5 4,219,469 + +1.1 4,220,262 + AO356_18775 0.58 -1.1 4,220,265 + AO356_18775 0.59 -1.2 4,220,265 + AO356_18775 0.59 -1.6 4,220,776 + +0.6 4,220,777 - +0.8 4,220,777 - +1.9 4,220,777 - -0.4 4,220,777 - +0.1 4,220,867 + +0.1 4,220,867 + +0.8 4,220,868 - -2.1 4,220,868 - +0.2 4,220,868 - -1.5 4,220,870 + -0.3 4,220,870 + +0.0 4,220,870 + -0.7 4,220,870 + +0.4 4,220,870 + -0.4 4,220,870 + -0.5 4,220,871 - -0.4 4,220,871 - -1.0 4,220,871 - -1.6 4,220,871 - -0.8 4,220,871 - -0.4 4,220,878 + +0.9 4,220,900 + +0.5 4,220,900 + +2.0 4,220,900 + +0.2 4,220,901 - -2.1 4,220,937 + +1.2 4,220,937 + +0.2 4,220,937 + +0.8 4,220,937 + +0.5 4,220,937 + +0.3 4,220,938 - +0.2 4,220,938 - -0.8 4,220,962 + +0.5 4,220,962 + +0.0 4,220,962 + +0.3 4,220,962 + +0.4 4,220,962 + -1.4 4,221,001 + AO356_18780 0.20 +0.9 4,221,090 + AO356_18780 0.67 +0.1 4,221,166 + +0.4 4,221,491 + -0.9 4,221,516 + +2.3 4,221,545 + -0.4 4,221,547 + +0.3 4,221,658 + -0.4 4,221,748 + AO356_18800 0.14 +0.1 4,221,748 + AO356_18800 0.14 +0.3 4,221,748 + AO356_18800 0.14 +0.2 4,221,749 - AO356_18800 0.14 +0.7 4,221,749 - AO356_18800 0.14 +0.5 4,221,749 - AO356_18800 0.14 +0.0 4,221,749 - AO356_18800 0.14 +0.4 4,221,749 - AO356_18800 0.14 -1.0 4,221,749 - AO356_18800 0.14 -0.0 4,221,749 - AO356_18800 0.14 +2.0 4,221,749 - AO356_18800 0.14 -0.9 4,221,752 + AO356_18800 0.15 +0.6 4,221,752 + AO356_18800 0.15 -0.7 4,221,752 + AO356_18800 0.15 +0.1 4,221,752 + AO356_18800 0.15 +0.0 4,221,753 - AO356_18800 0.15 -0.4 4,221,753 - AO356_18800 0.15 -0.4 4,221,753 - AO356_18800 0.15 +0.2 4,221,753 - AO356_18800 0.15 +0.8 4,221,753 - AO356_18800 0.15 +0.1 4,221,753 - AO356_18800 0.15 +0.6 4,221,753 - AO356_18800 0.15 -0.4 4,221,753 - AO356_18800 0.15 -0.7 4,221,754 + AO356_18800 0.15 -0.6 4,221,755 - AO356_18800 0.15 -0.1 4,221,755 - AO356_18800 0.15 -0.8
Or see this region's nucleotide sequence