Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03100

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03095 and AO356_03100 are separated by 195 nucleotidesAO356_03100 and AO356_03105 are separated by 103 nucleotides AO356_03095: AO356_03095 - protease HtpX, at 692,108 to 692,995 _03095 AO356_03100: AO356_03100 - thiopurine S-methyltransferase, at 693,191 to 693,844 _03100 AO356_03105: AO356_03105 - aromatic ring-opening dioxygenase LigB, at 693,948 to 694,715 _03105 Position (kb) 693 694Strain fitness (log2 ratio) -2 -1 0 1 2 3at 692.435 kb on + strand, within AO356_03095at 692.645 kb on - strand, within AO356_03095at 692.645 kb on - strand, within AO356_03095at 692.645 kb on - strand, within AO356_03095at 692.696 kb on + strand, within AO356_03095at 692.697 kb on - strand, within AO356_03095at 692.699 kb on + strand, within AO356_03095at 692.699 kb on + strand, within AO356_03095at 692.699 kb on + strand, within AO356_03095at 692.699 kb on + strand, within AO356_03095at 692.699 kb on + strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.700 kb on - strand, within AO356_03095at 692.727 kb on + strand, within AO356_03095at 692.728 kb on - strand, within AO356_03095at 692.884 kb on + strand, within AO356_03095at 692.885 kb on - strand, within AO356_03095at 693.053 kb on + strandat 693.053 kb on + strandat 693.054 kb on - strandat 693.054 kb on - strandat 693.127 kb on - strandat 693.127 kb on - strandat 693.179 kb on - strandat 693.375 kb on + strand, within AO356_03100at 693.375 kb on + strand, within AO356_03100at 693.376 kb on - strand, within AO356_03100at 693.376 kb on - strand, within AO356_03100at 693.376 kb on - strand, within AO356_03100at 693.376 kb on - strand, within AO356_03100at 693.385 kb on + strand, within AO356_03100at 693.385 kb on + strand, within AO356_03100at 693.385 kb on + strand, within AO356_03100at 693.385 kb on + strand, within AO356_03100at 693.386 kb on - strand, within AO356_03100at 693.435 kb on + strand, within AO356_03100at 693.436 kb on - strand, within AO356_03100at 693.436 kb on - strand, within AO356_03100at 693.483 kb on + strand, within AO356_03100at 693.483 kb on + strand, within AO356_03100at 693.484 kb on - strand, within AO356_03100at 693.484 kb on - strand, within AO356_03100at 693.484 kb on - strand, within AO356_03100at 693.484 kb on - strand, within AO356_03100at 693.484 kb on - strand, within AO356_03100at 693.575 kb on + strand, within AO356_03100at 693.576 kb on - strand, within AO356_03100at 693.576 kb on - strand, within AO356_03100at 693.576 kb on - strand, within AO356_03100at 693.883 kb on + strandat 693.884 kb on - strandat 693.885 kb on + strandat 693.886 kb on - strandat 693.888 kb on + strandat 693.889 kb on - strandat 693.889 kb on - strandat 693.889 kb on - strandat 693.889 kb on - strandat 693.901 kb on + strandat 693.901 kb on + strandat 693.902 kb on - strandat 693.902 kb on - strandat 693.928 kb on + strandat 693.965 kb on + strandat 693.965 kb on + strandat 693.966 kb on - strandat 693.966 kb on - strandat 694.161 kb on + strand, within AO356_03105at 694.161 kb on + strand, within AO356_03105at 694.161 kb on + strand, within AO356_03105at 694.161 kb on + strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.162 kb on - strand, within AO356_03105at 694.174 kb on - strand, within AO356_03105at 694.210 kb on + strand, within AO356_03105at 694.210 kb on + strand, within AO356_03105at 694.302 kb on + strand, within AO356_03105at 694.561 kb on - strand, within AO356_03105at 694.624 kb on - strand, within AO356_03105at 694.701 kb on + strandat 694.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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692,435 + AO356_03095 0.37 +1.0
692,645 - AO356_03095 0.60 +1.9
692,645 - AO356_03095 0.60 +1.2
692,645 - AO356_03095 0.60 +1.9
692,696 + AO356_03095 0.66 +1.5
692,697 - AO356_03095 0.66 -0.1
692,699 + AO356_03095 0.67 +1.4
692,699 + AO356_03095 0.67 +1.2
692,699 + AO356_03095 0.67 +0.4
692,699 + AO356_03095 0.67 +2.0
692,699 + AO356_03095 0.67 +1.4
692,700 - AO356_03095 0.67 +0.9
692,700 - AO356_03095 0.67 +1.1
692,700 - AO356_03095 0.67 +0.7
692,700 - AO356_03095 0.67 +0.5
692,700 - AO356_03095 0.67 +0.9
692,700 - AO356_03095 0.67 -0.1
692,727 + AO356_03095 0.70 +1.8
692,728 - AO356_03095 0.70 +0.6
692,884 + AO356_03095 0.87 +1.3
692,885 - AO356_03095 0.88 +1.7
693,053 + -0.3
693,053 + -0.3
693,054 - -0.2
693,054 - +2.0
693,127 - -0.8
693,127 - +0.3
693,179 - +0.1
693,375 + AO356_03100 0.28 +0.5
693,375 + AO356_03100 0.28 -0.3
693,376 - AO356_03100 0.28 +0.2
693,376 - AO356_03100 0.28 -0.7
693,376 - AO356_03100 0.28 -2.4
693,376 - AO356_03100 0.28 +0.1
693,385 + AO356_03100 0.30 -0.7
693,385 + AO356_03100 0.30 +1.2
693,385 + AO356_03100 0.30 +1.0
693,385 + AO356_03100 0.30 -1.0
693,386 - AO356_03100 0.30 +2.9
693,435 + AO356_03100 0.37 +1.0
693,436 - AO356_03100 0.37 +0.8
693,436 - AO356_03100 0.37 +0.8
693,483 + AO356_03100 0.45 +0.3
693,483 + AO356_03100 0.45 -1.6
693,484 - AO356_03100 0.45 +0.3
693,484 - AO356_03100 0.45 +1.3
693,484 - AO356_03100 0.45 +0.0
693,484 - AO356_03100 0.45 +2.8
693,484 - AO356_03100 0.45 +1.3
693,575 + AO356_03100 0.59 +0.3
693,576 - AO356_03100 0.59 +0.7
693,576 - AO356_03100 0.59 +1.3
693,576 - AO356_03100 0.59 +0.1
693,883 + +1.3
693,884 - -0.1
693,885 + -0.0
693,886 - +0.8
693,888 + +1.1
693,889 - +0.4
693,889 - -0.5
693,889 - +0.5
693,889 - +0.1
693,901 + -0.2
693,901 + -0.2
693,902 - -1.2
693,902 - -1.8
693,928 + +0.6
693,965 + -0.7
693,965 + +0.5
693,966 - +1.2
693,966 - +1.0
694,161 + AO356_03105 0.28 -0.3
694,161 + AO356_03105 0.28 -0.1
694,161 + AO356_03105 0.28 +0.3
694,161 + AO356_03105 0.28 +0.6
694,162 - AO356_03105 0.28 +1.3
694,162 - AO356_03105 0.28 +0.4
694,162 - AO356_03105 0.28 +0.3
694,162 - AO356_03105 0.28 -0.1
694,162 - AO356_03105 0.28 +0.9
694,162 - AO356_03105 0.28 -0.4
694,174 - AO356_03105 0.29 +0.5
694,210 + AO356_03105 0.34 +1.1
694,210 + AO356_03105 0.34 -0.1
694,302 + AO356_03105 0.46 -0.2
694,561 - AO356_03105 0.80 +1.6
694,624 - AO356_03105 0.88 +0.9
694,701 + +0.6
694,702 - -0.5

Or see this region's nucleotide sequence