Strain Fitness in Shewanella loihica PV-4 around Shew_3706

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3705 and Shew_3706 are separated by 65 nucleotidesShew_3706 and Shew_3707 are separated by 27 nucleotides Shew_3705: Shew_3705 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 4,409,367 to 4,410,296 _3705 Shew_3706: Shew_3706 - 3-deoxy-D-manno-octulosonic-acid kinase (RefSeq), at 4,410,362 to 4,411,087 _3706 Shew_3707: Shew_3707 - 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein (RefSeq), at 4,411,115 to 4,412,380 _3707 Position (kb) 4410 4411 4412Strain fitness (log2 ratio) -1 0 1at 4409.422 kb on - strandat 4409.630 kb on - strand, within Shew_3705at 4409.936 kb on + strand, within Shew_3705at 4409.992 kb on + strand, within Shew_3705at 4411.081 kb on + strandat 4411.089 kb on - strandat 4411.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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4,409,422 - -0.1
4,409,630 - Shew_3705 0.28 +0.4
4,409,936 + Shew_3705 0.61 +0.0
4,409,992 + Shew_3705 0.67 -0.6
4,411,081 + +0.3
4,411,089 - -0.2
4,411,089 - +0.3

Or see this region's nucleotide sequence