Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3516 and Shew_3517 are separated by 0 nucleotides Shew_3517 and Shew_3518 are separated by 10 nucleotides Shew_3518 and Shew_3519 overlap by 4 nucleotides
Shew_3516: Shew_3516 - glycosyl transferase family protein (RefSeq), at 4,201,430 to 4,203,148
_3516
Shew_3517: Shew_3517 - histidine ammonia-lyase (RefSeq), at 4,203,149 to 4,204,711
_3517
Shew_3518: Shew_3518 - thioesterase superfamily protein (RefSeq), at 4,204,722 to 4,205,156
_3518
Shew_3519: Shew_3519 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 4,205,153 to 4,205,926
_3519
Position (kb) 4203
4204
4205 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4202.179 kb on - strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.235 kb on + strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.243 kb on - strand, within Shew_3516 at 4202.406 kb on + strand, within Shew_3516 at 4202.507 kb on + strand, within Shew_3516 at 4202.577 kb on - strand, within Shew_3516 at 4202.671 kb on + strand, within Shew_3516 at 4202.677 kb on + strand, within Shew_3516 at 4202.695 kb on - strand, within Shew_3516 at 4202.727 kb on + strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.735 kb on - strand, within Shew_3516 at 4202.766 kb on - strand, within Shew_3516 at 4203.071 kb on - strand at 4203.469 kb on + strand, within Shew_3517 at 4203.469 kb on + strand, within Shew_3517 at 4203.511 kb on + strand, within Shew_3517 at 4203.688 kb on - strand, within Shew_3517 at 4203.696 kb on + strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517 at 4203.806 kb on - strand, within Shew_3517 at 4204.231 kb on - strand, within Shew_3517 at 4204.862 kb on - strand, within Shew_3518 at 4204.885 kb on - strand, within Shew_3518 at 4204.931 kb on - strand, within Shew_3518
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 4,202,179 - Shew_3516 0.44 +0.4 4,202,235 + Shew_3516 0.47 -0.2 4,202,235 + Shew_3516 0.47 -0.1 4,202,243 - Shew_3516 0.47 +3.8 4,202,243 - Shew_3516 0.47 -0.8 4,202,406 + Shew_3516 0.57 -0.5 4,202,507 + Shew_3516 0.63 -0.4 4,202,577 - Shew_3516 0.67 +0.2 4,202,671 + Shew_3516 0.72 -0.0 4,202,677 + Shew_3516 0.73 -0.2 4,202,695 - Shew_3516 0.74 -0.2 4,202,727 + Shew_3516 0.75 +0.5 4,202,735 - Shew_3516 0.76 -0.4 4,202,735 - Shew_3516 0.76 -0.2 4,202,766 - Shew_3516 0.78 +0.0 4,203,071 - -0.6 4,203,469 + Shew_3517 0.20 -1.4 4,203,469 + Shew_3517 0.20 -2.1 4,203,511 + Shew_3517 0.23 -2.1 4,203,688 - Shew_3517 0.34 -5.5 4,203,696 + Shew_3517 0.35 -4.7 4,203,806 - Shew_3517 0.42 -3.6 4,203,806 - Shew_3517 0.42 -5.6 4,204,231 - Shew_3517 0.69 -5.5 4,204,862 - Shew_3518 0.32 -5.7 4,204,885 - Shew_3518 0.37 -5.3 4,204,931 - Shew_3518 0.48 -5.0
Or see this region's nucleotide sequence