Strain Fitness in Shewanella loihica PV-4 around Shew_3171
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,773,743 | + | Shew_3170 | 0.37 | +0.2 | |
3,773,751 | - | Shew_3170 | 0.38 | -0.1 | |
3,773,946 | + | Shew_3170 | 0.54 | -0.3 | |
3,774,247 | + | Shew_3170 | 0.79 | -0.1 | |
3,774,291 | + | Shew_3170 | 0.83 | -0.6 | |
3,774,336 | - | Shew_3170 | 0.87 | -0.4 | |
3,774,379 | - | -0.6 | |||
3,774,404 | + | -0.1 | |||
3,774,496 | - | -1.3 | |||
3,775,755 | - | +1.3 | |||
3,775,886 | + | Shew_3172 | 0.20 | -0.4 | |
3,776,007 | + | Shew_3172 | 0.29 | -0.1 | |
3,776,087 | - | Shew_3172 | 0.35 | +0.2 | |
3,776,132 | + | Shew_3172 | 0.39 | +0.3 | |
3,776,226 | - | Shew_3172 | 0.46 | +0.1 | |
3,776,248 | - | Shew_3172 | 0.48 | -0.0 | |
3,776,338 | - | Shew_3172 | 0.55 | -0.1 | |
3,776,363 | + | Shew_3172 | 0.57 | -0.3 |
Or see this region's nucleotide sequence