Strain Fitness in Shewanella loihica PV-4 around Shew_3171

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3170 and Shew_3171 are separated by 149 nucleotidesShew_3171 and Shew_3172 are separated by 227 nucleotides Shew_3170: Shew_3170 - sodium/hydrogen exchanger (RefSeq), at 3,773,303 to 3,774,493 _3170 Shew_3171: Shew_3171 - prolipoprotein diacylglyceryl transferase (RefSeq), at 3,774,643 to 3,775,407 _3171 Shew_3172: Shew_3172 - 4-aminobutyrate aminotransferase (RefSeq), at 3,775,635 to 3,776,915 _3172 Position (kb) 3774 3775 3776Strain fitness (log2 ratio) -1 0 1at 3773.743 kb on + strand, within Shew_3170at 3773.751 kb on - strand, within Shew_3170at 3773.946 kb on + strand, within Shew_3170at 3774.247 kb on + strand, within Shew_3170at 3774.291 kb on + strand, within Shew_3170at 3774.336 kb on - strand, within Shew_3170at 3774.379 kb on - strandat 3774.404 kb on + strandat 3774.496 kb on - strandat 3775.755 kb on - strandat 3775.886 kb on + strand, within Shew_3172at 3776.007 kb on + strand, within Shew_3172at 3776.087 kb on - strand, within Shew_3172at 3776.132 kb on + strand, within Shew_3172at 3776.226 kb on - strand, within Shew_3172at 3776.248 kb on - strand, within Shew_3172at 3776.338 kb on - strand, within Shew_3172at 3776.363 kb on + strand, within Shew_3172

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,773,743 + Shew_3170 0.37 +0.2
3,773,751 - Shew_3170 0.38 -0.1
3,773,946 + Shew_3170 0.54 -0.3
3,774,247 + Shew_3170 0.79 -0.1
3,774,291 + Shew_3170 0.83 -0.6
3,774,336 - Shew_3170 0.87 -0.4
3,774,379 - -0.6
3,774,404 + -0.1
3,774,496 - -1.3
3,775,755 - +1.3
3,775,886 + Shew_3172 0.20 -0.4
3,776,007 + Shew_3172 0.29 -0.1
3,776,087 - Shew_3172 0.35 +0.2
3,776,132 + Shew_3172 0.39 +0.3
3,776,226 - Shew_3172 0.46 +0.1
3,776,248 - Shew_3172 0.48 -0.0
3,776,338 - Shew_3172 0.55 -0.1
3,776,363 + Shew_3172 0.57 -0.3

Or see this region's nucleotide sequence