Strain Fitness in Shewanella loihica PV-4 around Shew_2730

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2728 and Shew_2729 are separated by 123 nucleotidesShew_2729 and Shew_2730 are separated by 160 nucleotidesShew_2730 and Shew_2731 are separated by 161 nucleotidesShew_2731 and Shew_2732 are separated by 32 nucleotides Shew_2728: Shew_2728 - hypothetical protein (RefSeq), at 3,227,282 to 3,228,163 _2728 Shew_2729: Shew_2729 - TetR family transcriptional regulator (RefSeq), at 3,228,287 to 3,228,877 _2729 Shew_2730: Shew_2730 - glutathione S-transferase domain-containing protein (RefSeq), at 3,229,038 to 3,229,673 _2730 Shew_2731: Shew_2731 - hypothetical protein (RefSeq), at 3,229,835 to 3,230,395 _2731 Shew_2732: Shew_2732 - hypothetical protein (RefSeq), at 3,230,428 to 3,230,904 _2732 Position (kb) 3229 3230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3228.084 kb on - strandat 3228.107 kb on + strandat 3228.240 kb on + strandat 3228.287 kb on - strandat 3228.335 kb on + strandat 3228.343 kb on - strandat 3228.770 kb on - strand, within Shew_2729at 3229.344 kb on - strand, within Shew_2730at 3229.676 kb on - strandat 3229.686 kb on - strandat 3229.722 kb on - strandat 3229.734 kb on - strandat 3229.754 kb on + strandat 3229.762 kb on - strandat 3229.766 kb on + strandat 3229.774 kb on - strandat 3229.774 kb on - strandat 3229.774 kb on - strandat 3229.774 kb on - strandat 3229.774 kb on - strandat 3229.774 kb on - strandat 3229.776 kb on + strandat 3229.776 kb on + strandat 3229.783 kb on - strandat 3229.806 kb on + strandat 3229.819 kb on - strandat 3229.830 kb on + strandat 3229.833 kb on - strandat 3229.872 kb on + strandat 3229.934 kb on + strand, within Shew_2731at 3229.946 kb on + strand, within Shew_2731at 3229.946 kb on + strand, within Shew_2731at 3229.954 kb on - strand, within Shew_2731at 3229.954 kb on - strand, within Shew_2731at 3229.954 kb on - strand, within Shew_2731at 3229.954 kb on - strand, within Shew_2731at 3229.954 kb on - strand, within Shew_2731at 3229.965 kb on - strand, within Shew_2731at 3230.072 kb on + strand, within Shew_2731at 3230.077 kb on + strand, within Shew_2731at 3230.083 kb on - strand, within Shew_2731at 3230.085 kb on + strand, within Shew_2731at 3230.090 kb on + strand, within Shew_2731at 3230.090 kb on + strand, within Shew_2731at 3230.093 kb on - strand, within Shew_2731at 3230.095 kb on + strand, within Shew_2731at 3230.098 kb on - strand, within Shew_2731at 3230.098 kb on - strand, within Shew_2731at 3230.168 kb on + strand, within Shew_2731at 3230.192 kb on + strand, within Shew_2731at 3230.200 kb on - strand, within Shew_2731at 3230.218 kb on + strand, within Shew_2731at 3230.218 kb on + strand, within Shew_2731at 3230.218 kb on + strand, within Shew_2731at 3230.218 kb on + strand, within Shew_2731at 3230.224 kb on + strand, within Shew_2731at 3230.224 kb on + strand, within Shew_2731at 3230.226 kb on - strand, within Shew_2731at 3230.226 kb on - strand, within Shew_2731at 3230.249 kb on + strand, within Shew_2731at 3230.260 kb on + strand, within Shew_2731at 3230.260 kb on + strand, within Shew_2731at 3230.260 kb on + strand, within Shew_2731at 3230.260 kb on + strand, within Shew_2731at 3230.260 kb on + strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.268 kb on - strand, within Shew_2731at 3230.308 kb on + strand, within Shew_2731at 3230.321 kb on - strand, within Shew_2731at 3230.321 kb on + strand, within Shew_2731at 3230.321 kb on - strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.330 kb on + strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.338 kb on - strand, within Shew_2731at 3230.340 kb on + strandat 3230.340 kb on + strandat 3230.348 kb on - strandat 3230.348 kb on - strandat 3230.350 kb on + strandat 3230.350 kb on + strandat 3230.350 kb on + strandat 3230.350 kb on + strandat 3230.350 kb on + strandat 3230.353 kb on + strandat 3230.358 kb on - strandat 3230.361 kb on - strandat 3230.396 kb on + strandat 3230.396 kb on + strandat 3230.396 kb on + strandat 3230.396 kb on + strandat 3230.396 kb on + strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.404 kb on - strandat 3230.412 kb on - strandat 3230.438 kb on + strandat 3230.438 kb on + strandat 3230.446 kb on - strandat 3230.458 kb on + strandat 3230.488 kb on + strand, within Shew_2732at 3230.496 kb on - strand, within Shew_2732at 3230.500 kb on + strand, within Shew_2732at 3230.500 kb on + strand, within Shew_2732at 3230.500 kb on + strand, within Shew_2732at 3230.500 kb on + strand, within Shew_2732at 3230.508 kb on - strand, within Shew_2732at 3230.508 kb on - strand, within Shew_2732at 3230.514 kb on - strand, within Shew_2732at 3230.515 kb on - strand, within Shew_2732at 3230.535 kb on + strand, within Shew_2732at 3230.552 kb on - strand, within Shew_2732at 3230.563 kb on + strand, within Shew_2732at 3230.592 kb on + strand, within Shew_2732at 3230.600 kb on - strand, within Shew_2732at 3230.605 kb on + strand, within Shew_2732at 3230.605 kb on + strand, within Shew_2732at 3230.607 kb on - strand, within Shew_2732at 3230.613 kb on - strand, within Shew_2732at 3230.613 kb on - strand, within Shew_2732at 3230.613 kb on - strand, within Shew_2732at 3230.613 kb on - strand, within Shew_2732at 3230.614 kb on + strand, within Shew_2732at 3230.614 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.615 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.616 kb on + strand, within Shew_2732at 3230.618 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.622 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.624 kb on - strand, within Shew_2732at 3230.631 kb on - strand, within Shew_2732at 3230.666 kb on + strand, within Shew_2732

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,228,084 - +1.0
3,228,107 + +0.7
3,228,240 + -0.3
3,228,287 - -0.7
3,228,335 + -0.4
3,228,343 - +1.8
3,228,770 - Shew_2729 0.82 +0.2
3,229,344 - Shew_2730 0.48 -0.8
3,229,676 - +0.1
3,229,686 - +0.2
3,229,722 - +0.6
3,229,734 - -0.2
3,229,754 + -0.3
3,229,762 - +0.5
3,229,766 + -3.0
3,229,774 - +1.1
3,229,774 - -0.5
3,229,774 - -0.9
3,229,774 - -0.1
3,229,774 - -0.5
3,229,774 - -0.5
3,229,776 + -1.1
3,229,776 + +0.2
3,229,783 - -0.1
3,229,806 + +0.7
3,229,819 - +0.1
3,229,830 + +1.0
3,229,833 - +0.5
3,229,872 + +0.5
3,229,934 + Shew_2731 0.18 +0.0
3,229,946 + Shew_2731 0.20 +0.6
3,229,946 + Shew_2731 0.20 -1.3
3,229,954 - Shew_2731 0.21 -0.0
3,229,954 - Shew_2731 0.21 -0.6
3,229,954 - Shew_2731 0.21 +0.4
3,229,954 - Shew_2731 0.21 +0.3
3,229,954 - Shew_2731 0.21 +0.1
3,229,965 - Shew_2731 0.23 +0.2
3,230,072 + Shew_2731 0.42 -0.1
3,230,077 + Shew_2731 0.43 +0.8
3,230,083 - Shew_2731 0.44 -0.0
3,230,085 + Shew_2731 0.45 +0.7
3,230,090 + Shew_2731 0.45 -1.1
3,230,090 + Shew_2731 0.45 -0.2
3,230,093 - Shew_2731 0.46 +0.6
3,230,095 + Shew_2731 0.46 +0.2
3,230,098 - Shew_2731 0.47 -0.3
3,230,098 - Shew_2731 0.47 -0.2
3,230,168 + Shew_2731 0.59 +1.1
3,230,192 + Shew_2731 0.64 +0.6
3,230,200 - Shew_2731 0.65 +0.4
3,230,218 + Shew_2731 0.68 +0.0
3,230,218 + Shew_2731 0.68 +0.4
3,230,218 + Shew_2731 0.68 +0.3
3,230,218 + Shew_2731 0.68 -0.8
3,230,224 + Shew_2731 0.69 +0.1
3,230,224 + Shew_2731 0.69 -0.2
3,230,226 - Shew_2731 0.70 +0.0
3,230,226 - Shew_2731 0.70 -0.0
3,230,249 + Shew_2731 0.74 +0.2
3,230,260 + Shew_2731 0.76 +0.3
3,230,260 + Shew_2731 0.76 +0.6
3,230,260 + Shew_2731 0.76 +0.2
3,230,260 + Shew_2731 0.76 -0.4
3,230,260 + Shew_2731 0.76 -0.6
3,230,268 - Shew_2731 0.77 +0.4
3,230,268 - Shew_2731 0.77 +0.2
3,230,268 - Shew_2731 0.77 +0.4
3,230,268 - Shew_2731 0.77 +0.6
3,230,268 - Shew_2731 0.77 +0.1
3,230,268 - Shew_2731 0.77 -2.8
3,230,308 + Shew_2731 0.84 -0.0
3,230,321 - Shew_2731 0.87 +0.2
3,230,321 + Shew_2731 0.87 +0.1
3,230,321 - Shew_2731 0.87 +0.1
3,230,330 + Shew_2731 0.88 +0.1
3,230,330 + Shew_2731 0.88 +0.8
3,230,330 + Shew_2731 0.88 +0.2
3,230,330 + Shew_2731 0.88 -0.2
3,230,330 + Shew_2731 0.88 +0.3
3,230,330 + Shew_2731 0.88 +1.1
3,230,330 + Shew_2731 0.88 -0.2
3,230,330 + Shew_2731 0.88 +0.1
3,230,330 + Shew_2731 0.88 +0.2
3,230,330 + Shew_2731 0.88 +0.1
3,230,330 + Shew_2731 0.88 -0.1
3,230,330 + Shew_2731 0.88 +1.0
3,230,330 + Shew_2731 0.88 -0.2
3,230,330 + Shew_2731 0.88 +0.4
3,230,330 + Shew_2731 0.88 +0.2
3,230,330 + Shew_2731 0.88 +0.0
3,230,338 - Shew_2731 0.90 -0.9
3,230,338 - Shew_2731 0.90 -0.1
3,230,338 - Shew_2731 0.90 +0.1
3,230,338 - Shew_2731 0.90 -0.3
3,230,338 - Shew_2731 0.90 -1.2
3,230,338 - Shew_2731 0.90 -0.8
3,230,338 - Shew_2731 0.90 +0.1
3,230,338 - Shew_2731 0.90 +0.6
3,230,338 - Shew_2731 0.90 -0.2
3,230,338 - Shew_2731 0.90 +0.2
3,230,338 - Shew_2731 0.90 +0.3
3,230,338 - Shew_2731 0.90 +0.5
3,230,338 - Shew_2731 0.90 +0.1
3,230,338 - Shew_2731 0.90 +1.3
3,230,338 - Shew_2731 0.90 +0.1
3,230,338 - Shew_2731 0.90 -0.2
3,230,338 - Shew_2731 0.90 +0.3
3,230,338 - Shew_2731 0.90 +0.0
3,230,338 - Shew_2731 0.90 +1.6
3,230,340 + -0.1
3,230,340 + -0.8
3,230,348 - +0.1
3,230,348 - -0.8
3,230,350 + -0.2
3,230,350 + +0.2
3,230,350 + +0.8
3,230,350 + +0.3
3,230,350 + +2.2
3,230,353 + +0.2
3,230,358 - -0.1
3,230,361 - +0.0
3,230,396 + +0.1
3,230,396 + -0.4
3,230,396 + +0.2
3,230,396 + +0.6
3,230,396 + +0.0
3,230,404 - -0.0
3,230,404 - +0.3
3,230,404 - -0.7
3,230,404 - +0.0
3,230,404 - +0.6
3,230,404 - +0.4
3,230,404 - +0.4
3,230,412 - +1.6
3,230,438 + +0.7
3,230,438 + -0.8
3,230,446 - +0.5
3,230,458 + +0.2
3,230,488 + Shew_2732 0.13 +1.0
3,230,496 - Shew_2732 0.14 -0.2
3,230,500 + Shew_2732 0.15 -0.1
3,230,500 + Shew_2732 0.15 +0.5
3,230,500 + Shew_2732 0.15 +0.1
3,230,500 + Shew_2732 0.15 +0.3
3,230,508 - Shew_2732 0.17 -1.2
3,230,508 - Shew_2732 0.17 -0.3
3,230,514 - Shew_2732 0.18 -0.0
3,230,515 - Shew_2732 0.18 -0.2
3,230,535 + Shew_2732 0.22 +0.3
3,230,552 - Shew_2732 0.26 +0.8
3,230,563 + Shew_2732 0.28 +0.5
3,230,592 + Shew_2732 0.34 -0.5
3,230,600 - Shew_2732 0.36 -0.4
3,230,605 + Shew_2732 0.37 +0.4
3,230,605 + Shew_2732 0.37 +0.5
3,230,607 - Shew_2732 0.38 +0.1
3,230,613 - Shew_2732 0.39 +0.1
3,230,613 - Shew_2732 0.39 +0.1
3,230,613 - Shew_2732 0.39 +0.4
3,230,613 - Shew_2732 0.39 -0.3
3,230,614 + Shew_2732 0.39 +0.6
3,230,614 + Shew_2732 0.39 +0.3
3,230,615 + Shew_2732 0.39 +0.1
3,230,615 + Shew_2732 0.39 +0.2
3,230,615 + Shew_2732 0.39 +0.6
3,230,615 + Shew_2732 0.39 -0.2
3,230,615 + Shew_2732 0.39 +2.3
3,230,615 + Shew_2732 0.39 +1.2
3,230,616 + Shew_2732 0.39 -0.7
3,230,616 + Shew_2732 0.39 +1.1
3,230,616 + Shew_2732 0.39 +0.3
3,230,616 + Shew_2732 0.39 -1.4
3,230,616 + Shew_2732 0.39 -0.7
3,230,616 + Shew_2732 0.39 +1.1
3,230,616 + Shew_2732 0.39 +0.8
3,230,616 + Shew_2732 0.39 +0.5
3,230,616 + Shew_2732 0.39 +0.3
3,230,616 + Shew_2732 0.39 +1.0
3,230,616 + Shew_2732 0.39 -0.5
3,230,616 + Shew_2732 0.39 +0.2
3,230,616 + Shew_2732 0.39 +0.4
3,230,616 + Shew_2732 0.39 +0.1
3,230,618 - Shew_2732 0.40 +0.2
3,230,622 - Shew_2732 0.41 +1.4
3,230,622 - Shew_2732 0.41 -0.1
3,230,622 - Shew_2732 0.41 +1.7
3,230,622 - Shew_2732 0.41 +0.7
3,230,622 - Shew_2732 0.41 +1.0
3,230,622 - Shew_2732 0.41 -1.3
3,230,622 - Shew_2732 0.41 +0.3
3,230,622 - Shew_2732 0.41 +0.8
3,230,622 - Shew_2732 0.41 +0.4
3,230,622 - Shew_2732 0.41 -0.9
3,230,622 - Shew_2732 0.41 -0.5
3,230,622 - Shew_2732 0.41 -0.9
3,230,624 - Shew_2732 0.41 +0.6
3,230,624 - Shew_2732 0.41 +0.2
3,230,624 - Shew_2732 0.41 +0.0
3,230,624 - Shew_2732 0.41 +0.3
3,230,624 - Shew_2732 0.41 +0.0
3,230,624 - Shew_2732 0.41 -0.0
3,230,624 - Shew_2732 0.41 -1.9
3,230,624 - Shew_2732 0.41 -0.2
3,230,624 - Shew_2732 0.41 +0.0
3,230,624 - Shew_2732 0.41 +0.2
3,230,624 - Shew_2732 0.41 -0.0
3,230,624 - Shew_2732 0.41 -0.0
3,230,624 - Shew_2732 0.41 +1.2
3,230,624 - Shew_2732 0.41 +0.1
3,230,631 - Shew_2732 0.43 +0.2
3,230,666 + Shew_2732 0.50 +1.9

Or see this region's nucleotide sequence