Strain Fitness in Shewanella loihica PV-4 around Shew_2664

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2663 and Shew_2664 are separated by 398 nucleotidesShew_2664 and Shew_2665 overlap by 1 nucleotides Shew_2663: Shew_2663 - elongation factor G (RefSeq), at 3,136,916 to 3,138,964 _2663 Shew_2664: Shew_2664 - transcriptional regulator, putative (RefSeq), at 3,139,363 to 3,140,217 _2664 Shew_2665: Shew_2665 - beta-ketoacyl synthase (RefSeq), at 3,140,217 to 3,148,076 _2665 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3138.404 kb on - strand, within Shew_2663at 3138.582 kb on + strand, within Shew_2663at 3138.582 kb on + strand, within Shew_2663at 3138.582 kb on + strand, within Shew_2663at 3138.582 kb on + strand, within Shew_2663at 3138.582 kb on + strand, within Shew_2663at 3138.590 kb on - strand, within Shew_2663at 3138.590 kb on - strand, within Shew_2663at 3138.590 kb on - strand, within Shew_2663at 3138.775 kb on + strandat 3138.775 kb on + strandat 3138.775 kb on + strandat 3138.783 kb on - strandat 3138.783 kb on - strandat 3138.797 kb on - strandat 3138.900 kb on - strandat 3139.093 kb on - strandat 3139.147 kb on - strandat 3139.610 kb on - strand, within Shew_2664at 3139.659 kb on + strand, within Shew_2664at 3139.683 kb on + strand, within Shew_2664at 3139.709 kb on + strand, within Shew_2664at 3139.920 kb on - strand, within Shew_2664at 3139.942 kb on - strand, within Shew_2664at 3140.157 kb on + strandat 3140.544 kb on - strandat 3141.009 kb on + strand, within Shew_2665

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,138,404 - Shew_2663 0.73 +0.1
3,138,582 + Shew_2663 0.81 +0.2
3,138,582 + Shew_2663 0.81 -0.3
3,138,582 + Shew_2663 0.81 +0.1
3,138,582 + Shew_2663 0.81 -0.3
3,138,582 + Shew_2663 0.81 -0.4
3,138,590 - Shew_2663 0.82 -0.1
3,138,590 - Shew_2663 0.82 -0.6
3,138,590 - Shew_2663 0.82 +0.3
3,138,775 + +0.4
3,138,775 + +1.3
3,138,775 + -0.2
3,138,783 - +0.4
3,138,783 - +0.4
3,138,797 - +0.1
3,138,900 - +0.4
3,139,093 - -0.0
3,139,147 - -0.4
3,139,610 - Shew_2664 0.29 -4.0
3,139,659 + Shew_2664 0.35 -1.5
3,139,683 + Shew_2664 0.37 -1.1
3,139,709 + Shew_2664 0.40 -3.0
3,139,920 - Shew_2664 0.65 -3.5
3,139,942 - Shew_2664 0.68 -1.0
3,140,157 + -2.7
3,140,544 - -5.1
3,141,009 + Shew_2665 0.10 -4.5

Or see this region's nucleotide sequence