Strain Fitness in Shewanella loihica PV-4 around Shew_2664
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,138,404 | - | Shew_2663 | 0.73 | +0.1 | |
3,138,582 | + | Shew_2663 | 0.81 | +0.2 | |
3,138,582 | + | Shew_2663 | 0.81 | -0.3 | |
3,138,582 | + | Shew_2663 | 0.81 | +0.1 | |
3,138,582 | + | Shew_2663 | 0.81 | -0.3 | |
3,138,582 | + | Shew_2663 | 0.81 | -0.4 | |
3,138,590 | - | Shew_2663 | 0.82 | -0.1 | |
3,138,590 | - | Shew_2663 | 0.82 | -0.6 | |
3,138,590 | - | Shew_2663 | 0.82 | +0.3 | |
3,138,775 | + | +0.4 | |||
3,138,775 | + | +1.3 | |||
3,138,775 | + | -0.2 | |||
3,138,783 | - | +0.4 | |||
3,138,783 | - | +0.4 | |||
3,138,797 | - | +0.1 | |||
3,138,900 | - | +0.4 | |||
3,139,093 | - | -0.0 | |||
3,139,147 | - | -0.4 | |||
3,139,610 | - | Shew_2664 | 0.29 | -4.0 | |
3,139,659 | + | Shew_2664 | 0.35 | -1.5 | |
3,139,683 | + | Shew_2664 | 0.37 | -1.1 | |
3,139,709 | + | Shew_2664 | 0.40 | -3.0 | |
3,139,920 | - | Shew_2664 | 0.65 | -3.5 | |
3,139,942 | - | Shew_2664 | 0.68 | -1.0 | |
3,140,157 | + | -2.7 | |||
3,140,544 | - | -5.1 | |||
3,141,009 | + | Shew_2665 | 0.10 | -4.5 |
Or see this region's nucleotide sequence