Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2587 and Shew_2588 are separated by 77 nucleotides Shew_2588 and Shew_2589 are separated by 41 nucleotides Shew_2589 and Shew_2590 are separated by 2 nucleotides Shew_2590 and Shew_2591 are separated by 9 nucleotides
Shew_2587: Shew_2587 - hypothetical protein (RefSeq), at 3,053,469 to 3,054,737
_2587
Shew_2588: Shew_2588 - putative lipoprotein (RefSeq), at 3,054,815 to 3,055,231
_2588
Shew_2589: Shew_2589 - hypothetical protein (RefSeq), at 3,055,273 to 3,056,010
_2589
Shew_2590: Shew_2590 - hexapaptide repeat-containing transferase (RefSeq), at 3,056,013 to 3,056,642
_2590
Shew_2591: Shew_2591 - hypothetical protein (RefSeq), at 3,056,652 to 3,056,915
_2591
Position (kb)
3055
3056
3057 Strain fitness (log2 ratio)
-1
0
1 at 3054.360 kb on - strand, within Shew_2587 at 3054.376 kb on - strand, within Shew_2587 at 3054.464 kb on - strand, within Shew_2587 at 3054.474 kb on - strand, within Shew_2587 at 3054.502 kb on + strand, within Shew_2587 at 3054.502 kb on + strand, within Shew_2587 at 3054.520 kb on - strand, within Shew_2587 at 3054.549 kb on - strand, within Shew_2587 at 3054.781 kb on + strand at 3054.911 kb on + strand, within Shew_2588 at 3054.991 kb on + strand, within Shew_2588 at 3054.999 kb on - strand, within Shew_2588 at 3055.244 kb on + strand at 3055.451 kb on - strand, within Shew_2589 at 3055.619 kb on - strand, within Shew_2589 at 3056.946 kb on + strand at 3056.954 kb on - strand at 3056.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,054,360 - Shew_2587 0.70 -0.1 3,054,376 - Shew_2587 0.71 +0.1 3,054,464 - Shew_2587 0.78 -0.1 3,054,474 - Shew_2587 0.79 +1.1 3,054,502 + Shew_2587 0.81 -0.0 3,054,502 + Shew_2587 0.81 -0.2 3,054,520 - Shew_2587 0.83 -1.6 3,054,549 - Shew_2587 0.85 +0.7 3,054,781 + -1.1 3,054,911 + Shew_2588 0.23 -1.0 3,054,991 + Shew_2588 0.42 -0.6 3,054,999 - Shew_2588 0.44 +0.5 3,055,244 + +0.5 3,055,451 - Shew_2589 0.24 -0.4 3,055,619 - Shew_2589 0.47 -1.3 3,056,946 + +0.1 3,056,954 - -0.1 3,056,988 - -0.2
Or see this region's nucleotide sequence