Strain Fitness in Shewanella loihica PV-4 around Shew_2493

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2492 and Shew_2493 are separated by 85 nucleotidesShew_2493 and Shew_2494 are separated by 89 nucleotidesShew_2494 and pspB overlap by 14 nucleotidespspB and Shew_2496 are separated by 20 nucleotides Shew_2492: Shew_2492 - hypothetical protein (RefSeq), at 2,931,878 to 2,932,972 _2492 Shew_2493: Shew_2493 - protein of unknown function DUF463, YcjX family protein (RefSeq), at 2,933,058 to 2,934,503 _2493 Shew_2494: Shew_2494 - phage shock protein C, PspC (RefSeq), at 2,934,593 to 2,934,988 _2494 Shew_2495: pspB - phage shock protein B (RefSeq), at 2,934,975 to 2,935,214 pspB Shew_2496: Shew_2496 - phage shock protein A, PspA (RefSeq), at 2,935,235 to 2,935,918 _2496 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2932.564 kb on + strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.657 kb on + strand, within Shew_2492at 2932.665 kb on - strand, within Shew_2492at 2933.176 kb on - strandat 2933.266 kb on - strand, within Shew_2493at 2933.655 kb on + strand, within Shew_2493at 2934.148 kb on + strand, within Shew_2493at 2934.187 kb on - strand, within Shew_2493at 2934.524 kb on + strandat 2934.613 kb on + strandat 2934.636 kb on + strand, within Shew_2494at 2934.926 kb on + strand, within Shew_2494at 2935.299 kb on - strandat 2935.360 kb on + strand, within Shew_2496

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,932,564 + Shew_2492 0.63 -0.4
2,932,572 - Shew_2492 0.63 +0.2
2,932,572 - Shew_2492 0.63 -0.8
2,932,572 - Shew_2492 0.63 -1.2
2,932,657 + Shew_2492 0.71 -0.8
2,932,665 - Shew_2492 0.72 -1.1
2,933,176 - -0.9
2,933,266 - Shew_2493 0.14 -0.6
2,933,655 + Shew_2493 0.41 -1.2
2,934,148 + Shew_2493 0.75 -1.3
2,934,187 - Shew_2493 0.78 -0.6
2,934,524 + -1.0
2,934,613 + -6.4
2,934,636 + Shew_2494 0.11 -5.8
2,934,926 + Shew_2494 0.84 -6.9
2,935,299 - -7.3
2,935,360 + Shew_2496 0.18 -2.0

Or see this region's nucleotide sequence