Strain Fitness in Shewanella loihica PV-4 around Shew_2492

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2491 and Shew_2492 are separated by 125 nucleotidesShew_2492 and Shew_2493 are separated by 85 nucleotides Shew_2491: Shew_2491 - methionine gamma-lyase (RefSeq), at 2,930,577 to 2,931,752 _2491 Shew_2492: Shew_2492 - hypothetical protein (RefSeq), at 2,931,878 to 2,932,972 _2492 Shew_2493: Shew_2493 - protein of unknown function DUF463, YcjX family protein (RefSeq), at 2,933,058 to 2,934,503 _2493 Position (kb) 2931 2932 2933Strain fitness (log2 ratio) -1 0 1at 2931.061 kb on - strand, within Shew_2491at 2931.144 kb on + strand, within Shew_2491at 2931.152 kb on - strand, within Shew_2491at 2931.164 kb on - strand, within Shew_2491at 2931.407 kb on + strand, within Shew_2491at 2931.428 kb on - strand, within Shew_2491at 2931.428 kb on - strand, within Shew_2491at 2931.720 kb on - strandat 2932.564 kb on + strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.572 kb on - strand, within Shew_2492at 2932.657 kb on + strand, within Shew_2492at 2932.665 kb on - strand, within Shew_2492at 2933.176 kb on - strandat 2933.266 kb on - strand, within Shew_2493at 2933.655 kb on + strand, within Shew_2493

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,931,061 - Shew_2491 0.41 -0.0
2,931,144 + Shew_2491 0.48 -0.6
2,931,152 - Shew_2491 0.49 +0.2
2,931,164 - Shew_2491 0.50 -0.3
2,931,407 + Shew_2491 0.71 +0.1
2,931,428 - Shew_2491 0.72 -0.1
2,931,428 - Shew_2491 0.72 +0.2
2,931,720 - +0.3
2,932,564 + Shew_2492 0.63 -0.4
2,932,572 - Shew_2492 0.63 +0.2
2,932,572 - Shew_2492 0.63 -0.8
2,932,572 - Shew_2492 0.63 -1.2
2,932,657 + Shew_2492 0.71 -0.8
2,932,665 - Shew_2492 0.72 -1.1
2,933,176 - -0.9
2,933,266 - Shew_2493 0.14 -0.6
2,933,655 + Shew_2493 0.41 -1.2

Or see this region's nucleotide sequence