Strain Fitness in Shewanella loihica PV-4 around Shew_1714

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1713 and Shew_1714 are separated by 90 nucleotidesShew_1714 and Shew_1715 are separated by 53 nucleotides Shew_1713: Shew_1713 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,965,922 to 1,966,971 _1713 Shew_1714: Shew_1714 - alpha/beta hydrolase fold (RefSeq), at 1,967,062 to 1,967,934 _1714 Shew_1715: Shew_1715 - peptide synthase (RefSeq), at 1,967,988 to 1,969,679 _1715 Position (kb) 1967 1968Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1966.141 kb on - strand, within Shew_1713at 1966.434 kb on + strand, within Shew_1713at 1966.857 kb on - strand, within Shew_1713at 1967.010 kb on - strandat 1967.150 kb on - strand, within Shew_1714at 1967.536 kb on - strand, within Shew_1714

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
1,966,141 - Shew_1713 0.21 -4.6
1,966,434 + Shew_1713 0.49 -3.3
1,966,857 - Shew_1713 0.89 -4.3
1,967,010 - -3.7
1,967,150 - Shew_1714 0.10 -2.8
1,967,536 - Shew_1714 0.54 -2.3

Or see this region's nucleotide sequence