Strain Fitness in Shewanella loihica PV-4 around Shew_1713

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1712 and Shew_1713 are separated by 310 nucleotidesShew_1713 and Shew_1714 are separated by 90 nucleotides Shew_1712: Shew_1712 - hypothetical protein (RefSeq), at 1,964,325 to 1,965,611 _1712 Shew_1713: Shew_1713 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,965,922 to 1,966,971 _1713 Shew_1714: Shew_1714 - alpha/beta hydrolase fold (RefSeq), at 1,967,062 to 1,967,934 _1714 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1965.425 kb on - strand, within Shew_1712at 1965.507 kb on + strandat 1966.141 kb on - strand, within Shew_1713at 1966.434 kb on + strand, within Shew_1713at 1966.857 kb on - strand, within Shew_1713at 1967.010 kb on - strandat 1967.150 kb on - strand, within Shew_1714at 1967.536 kb on - strand, within Shew_1714

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,965,425 - Shew_1712 0.85 +0.1
1,965,507 + +0.3
1,966,141 - Shew_1713 0.21 -4.6
1,966,434 + Shew_1713 0.49 -3.3
1,966,857 - Shew_1713 0.89 -4.3
1,967,010 - -3.7
1,967,150 - Shew_1714 0.10 -2.8
1,967,536 - Shew_1714 0.54 -2.3

Or see this region's nucleotide sequence