Strain Fitness in Shewanella loihica PV-4 around Shew_1649

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1648 and Shew_1649 are separated by 14 nucleotidesShew_1649 and gltA are separated by 748 nucleotides Shew_1648: Shew_1648 - acriflavin resistance protein (RefSeq), at 1,892,055 to 1,895,303 _1648 Shew_1649: Shew_1649 - RND family efflux transporter MFP subunit (RefSeq), at 1,895,318 to 1,896,382 _1649 Shew_1650: gltA - type II citrate synthase (RefSeq), at 1,897,131 to 1,898,417 gltA Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1894.510 kb on - strand, within Shew_1648at 1894.821 kb on - strand, within Shew_1648at 1895.136 kb on - strandat 1895.189 kb on - strandat 1895.434 kb on + strand, within Shew_1649at 1895.459 kb on + strand, within Shew_1649at 1896.029 kb on + strand, within Shew_1649at 1896.630 kb on - strandat 1896.672 kb on + strandat 1896.672 kb on + strandat 1896.948 kb on + strandat 1897.177 kb on - strandat 1897.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,894,510 - Shew_1648 0.76 -5.9
1,894,821 - Shew_1648 0.85 -6.6
1,895,136 - -5.4
1,895,189 - -4.5
1,895,434 + Shew_1649 0.11 -5.1
1,895,459 + Shew_1649 0.13 -4.6
1,896,029 + Shew_1649 0.67 -3.7
1,896,630 - +1.5
1,896,672 + +0.3
1,896,672 + +0.2
1,896,948 + +0.4
1,897,177 - +3.6
1,897,182 - +2.8

Or see this region's nucleotide sequence