Strain Fitness in Shewanella loihica PV-4 around Shew_0483

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0482 and Shew_0483 are separated by 2 nucleotidesShew_0483 and Shew_0484 are separated by 121 nucleotides Shew_0482: Shew_0482 - hypothetical protein (RefSeq), at 539,397 to 540,563 _0482 Shew_0483: Shew_0483 - hypothetical protein (RefSeq), at 540,566 to 541,378 _0483 Shew_0484: Shew_0484 - hypothetical protein (RefSeq), at 541,500 to 542,771 _0484 Position (kb) 540 541 542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 539.630 kb on + strand, within Shew_0482at 539.638 kb on - strand, within Shew_0482at 539.638 kb on - strand, within Shew_0482at 539.638 kb on - strand, within Shew_0482at 539.689 kb on - strand, within Shew_0482at 539.721 kb on - strand, within Shew_0482at 539.861 kb on + strand, within Shew_0482at 540.699 kb on - strand, within Shew_0483at 540.824 kb on + strand, within Shew_0483at 540.906 kb on + strand, within Shew_0483at 540.914 kb on - strand, within Shew_0483at 541.592 kb on - strandat 541.912 kb on - strand, within Shew_0484at 542.109 kb on - strand, within Shew_0484

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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539,630 + Shew_0482 0.20 +0.2
539,638 - Shew_0482 0.21 -0.4
539,638 - Shew_0482 0.21 -0.1
539,638 - Shew_0482 0.21 +0.3
539,689 - Shew_0482 0.25 -0.1
539,721 - Shew_0482 0.28 +0.6
539,861 + Shew_0482 0.40 +0.0
540,699 - Shew_0483 0.16 -1.4
540,824 + Shew_0483 0.32 -3.9
540,906 + Shew_0483 0.42 -1.5
540,914 - Shew_0483 0.43 -1.4
541,592 - -0.5
541,912 - Shew_0484 0.32 -1.3
542,109 - Shew_0484 0.48 -0.2

Or see this region's nucleotide sequence