Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0258 and Shew_0259 are separated by 112 nucleotides Shew_0259 and Shew_0260 are separated by 322 nucleotides Shew_0260 and Shew_0261 are separated by 250 nucleotides Shew_0261 and Shew_0262 are separated by 17 nucleotides
Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701
_0258
Shew_0259: Shew_0259 - hypothetical protein (RefSeq), at 278,814 to 279,215
_0259
Shew_0260: Shew_0260 - hypothetical protein (RefSeq), at 279,538 to 280,386
_0260
Shew_0261: Shew_0261 - hypothetical protein (RefSeq), at 280,637 to 280,948
_0261
Shew_0262: Shew_0262 - hypothetical protein (RefSeq), at 280,966 to 282,420
_0262
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1 at 278.562 kb on - strand, within Shew_0258 at 278.562 kb on - strand, within Shew_0258 at 278.613 kb on + strand at 278.847 kb on - strand at 278.902 kb on + strand, within Shew_0259 at 279.095 kb on + strand, within Shew_0259 at 279.103 kb on - strand, within Shew_0259 at 279.239 kb on + strand at 279.256 kb on - strand at 279.515 kb on + strand at 279.583 kb on - strand at 279.593 kb on - strand at 279.598 kb on - strand at 279.875 kb on - strand, within Shew_0260 at 279.972 kb on + strand, within Shew_0260 at 280.112 kb on + strand, within Shew_0260 at 280.308 kb on - strand at 280.380 kb on + strand at 280.388 kb on - strand at 280.743 kb on - strand, within Shew_0261 at 280.950 kb on + strand at 280.958 kb on - strand at 280.964 kb on - strand at 281.023 kb on + strand at 281.092 kb on - strand at 281.163 kb on + strand, within Shew_0262 at 281.243 kb on - strand, within Shew_0262
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 278,562 - Shew_0258 0.85 -2.7 278,562 - Shew_0258 0.85 +0.2 278,613 + -0.1 278,847 - +0.2 278,902 + Shew_0259 0.22 -0.1 279,095 + Shew_0259 0.70 -0.1 279,103 - Shew_0259 0.72 +0.4 279,239 + -0.4 279,256 - -0.9 279,515 + +0.3 279,583 - +0.4 279,593 - +0.0 279,598 - +0.3 279,875 - Shew_0260 0.40 +0.9 279,972 + Shew_0260 0.51 +0.5 280,112 + Shew_0260 0.68 +0.9 280,308 - +0.4 280,380 + +0.1 280,388 - -0.6 280,743 - Shew_0261 0.34 -0.1 280,950 + -0.4 280,958 - -0.3 280,964 - -0.3 281,023 + +0.0 281,092 - +0.6 281,163 + Shew_0262 0.14 +0.3 281,243 - Shew_0262 0.19 +0.2
Or see this region's nucleotide sequence