Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3057

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3055 and Dshi_3056 overlap by 4 nucleotidesDshi_3056 and Dshi_3057 are separated by 164 nucleotidesDshi_3057 and Dshi_3058 are separated by 288 nucleotides Dshi_3055: Dshi_3055 - protein of unknown function DUF214 (RefSeq), at 3,223,182 to 3,224,075 _3055 Dshi_3056: Dshi_3056 - ABC transporter related (RefSeq), at 3,224,072 to 3,224,743 _3056 Dshi_3057: Dshi_3057 - MJ0042 family finger-like protein (RefSeq), at 3,224,908 to 3,225,654 _3057 Dshi_3058: Dshi_3058 - hypothetical protein (RefSeq), at 3,225,943 to 3,228,627 _3058 Position (kb) 3224 3225 3226Strain fitness (log2 ratio) -2 -1 0 1at 3224.017 kb on + strandat 3224.077 kb on + strandat 3224.281 kb on + strand, within Dshi_3056at 3224.438 kb on - strand, within Dshi_3056at 3224.724 kb on + strandat 3224.746 kb on - strandat 3224.754 kb on - strandat 3224.836 kb on + strandat 3225.746 kb on + strandat 3225.870 kb on - strandat 3226.090 kb on - strandat 3226.090 kb on - strandat 3226.154 kb on + strandat 3226.632 kb on + strand, within Dshi_3058at 3226.640 kb on - strand, within Dshi_3058

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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3,224,017 + +1.3
3,224,077 + -0.9
3,224,281 + Dshi_3056 0.31 -0.5
3,224,438 - Dshi_3056 0.54 -0.4
3,224,724 + -0.6
3,224,746 - -1.9
3,224,754 - -0.3
3,224,836 + -2.2
3,225,746 + -1.0
3,225,870 - -0.0
3,226,090 - -1.3
3,226,090 - -0.3
3,226,154 + -0.6
3,226,632 + Dshi_3058 0.26 -0.4
3,226,640 - Dshi_3058 0.26 -1.3

Or see this region's nucleotide sequence