Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2682

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2680 and Dshi_2681 are separated by 91 nucleotidesDshi_2681 and Dshi_2682 are separated by 13 nucleotidesDshi_2682 and Dshi_2683 are separated by 192 nucleotides Dshi_2680: Dshi_2680 - glycine dehydrogenase (RefSeq), at 2,839,208 to 2,842,072 _2680 Dshi_2681: Dshi_2681 - glycine cleavage system H protein (RefSeq), at 2,842,164 to 2,842,532 _2681 Dshi_2682: Dshi_2682 - glycine cleavage system T protein (RefSeq), at 2,842,546 to 2,843,631 _2682 Dshi_2683: Dshi_2683 - Aldose 1-epimerase (RefSeq), at 2,843,824 to 2,844,828 _2683 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -2 -1 0 1at 2841.735 kb on - strand, within Dshi_2680at 2841.744 kb on + strandat 2842.108 kb on - strandat 2842.161 kb on + strandat 2842.236 kb on - strand, within Dshi_2681at 2842.293 kb on - strand, within Dshi_2681at 2842.359 kb on - strand, within Dshi_2681at 2842.847 kb on + strand, within Dshi_2682at 2843.075 kb on + strand, within Dshi_2682at 2843.359 kb on - strand, within Dshi_2682at 2843.533 kb on - strandat 2843.799 kb on + strandat 2843.922 kb on - strandat 2843.942 kb on - strand, within Dshi_2683at 2844.020 kb on + strand, within Dshi_2683at 2844.195 kb on - strand, within Dshi_2683at 2844.196 kb on - strand, within Dshi_2683at 2844.280 kb on + strand, within Dshi_2683at 2844.280 kb on + strand, within Dshi_2683at 2844.285 kb on + strand, within Dshi_2683at 2844.300 kb on - strand, within Dshi_2683at 2844.407 kb on + strand, within Dshi_2683at 2844.407 kb on + strand, within Dshi_2683at 2844.430 kb on - strand, within Dshi_2683at 2844.556 kb on + strand, within Dshi_2683

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,841,735 - Dshi_2680 0.88 -0.1
2,841,744 + -0.3
2,842,108 - +0.2
2,842,161 + -0.2
2,842,236 - Dshi_2681 0.20 +0.8
2,842,293 - Dshi_2681 0.35 +0.2
2,842,359 - Dshi_2681 0.53 -0.7
2,842,847 + Dshi_2682 0.28 -0.2
2,843,075 + Dshi_2682 0.49 -0.1
2,843,359 - Dshi_2682 0.75 -2.6
2,843,533 - +0.7
2,843,799 + -2.7
2,843,922 - +0.7
2,843,942 - Dshi_2683 0.12 -0.3
2,844,020 + Dshi_2683 0.20 -0.1
2,844,195 - Dshi_2683 0.37 -0.1
2,844,196 - Dshi_2683 0.37 +0.0
2,844,280 + Dshi_2683 0.45 -0.4
2,844,280 + Dshi_2683 0.45 +0.3
2,844,285 + Dshi_2683 0.46 -1.3
2,844,300 - Dshi_2683 0.47 -0.2
2,844,407 + Dshi_2683 0.58 +0.4
2,844,407 + Dshi_2683 0.58 +0.1
2,844,430 - Dshi_2683 0.60 -0.4
2,844,556 + Dshi_2683 0.73 -1.0

Or see this region's nucleotide sequence