Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2681

Experiment: Urea (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2680 and Dshi_2681 are separated by 91 nucleotidesDshi_2681 and Dshi_2682 are separated by 13 nucleotides Dshi_2680: Dshi_2680 - glycine dehydrogenase (RefSeq), at 2,839,208 to 2,842,072 _2680 Dshi_2681: Dshi_2681 - glycine cleavage system H protein (RefSeq), at 2,842,164 to 2,842,532 _2681 Dshi_2682: Dshi_2682 - glycine cleavage system T protein (RefSeq), at 2,842,546 to 2,843,631 _2682 Position (kb) 2842 2843Strain fitness (log2 ratio) -2 -1 0 1at 2841.171 kb on + strand, within Dshi_2680at 2841.441 kb on - strand, within Dshi_2680at 2841.456 kb on - strand, within Dshi_2680at 2841.735 kb on - strand, within Dshi_2680at 2841.744 kb on + strandat 2842.108 kb on - strandat 2842.161 kb on + strandat 2842.236 kb on - strand, within Dshi_2681at 2842.293 kb on - strand, within Dshi_2681at 2842.359 kb on - strand, within Dshi_2681at 2842.847 kb on + strand, within Dshi_2682at 2843.075 kb on + strand, within Dshi_2682at 2843.359 kb on - strand, within Dshi_2682

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
remove
2,841,171 + Dshi_2680 0.69 -1.0
2,841,441 - Dshi_2680 0.78 +0.3
2,841,456 - Dshi_2680 0.78 +0.1
2,841,735 - Dshi_2680 0.88 -0.1
2,841,744 + -0.3
2,842,108 - +0.2
2,842,161 + -0.2
2,842,236 - Dshi_2681 0.20 +0.8
2,842,293 - Dshi_2681 0.35 +0.2
2,842,359 - Dshi_2681 0.53 -0.7
2,842,847 + Dshi_2682 0.28 -0.2
2,843,075 + Dshi_2682 0.49 -0.1
2,843,359 - Dshi_2682 0.75 -2.6

Or see this region's nucleotide sequence