Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1241 and Dshi_1242 overlap by 4 nucleotides Dshi_1242 and Dshi_1243 overlap by 4 nucleotides Dshi_1243 and Dshi_1244 overlap by 1 nucleotides
Dshi_1241: Dshi_1241 - KDPG and KHG aldolase (RefSeq), at 1,288,021 to 1,288,626
_1241
Dshi_1242: Dshi_1242 - 2-dehydro-3-deoxygalactonokinase (RefSeq), at 1,288,623 to 1,289,519
_1242
Dshi_1243: Dshi_1243 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,289,516 to 1,290,292
_1243
Dshi_1244: Dshi_1244 - Dihydroxy-acid dehydratase (RefSeq), at 1,290,292 to 1,292,001
_1244
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1288.595 kb on - strand at 1288.630 kb on + strand at 1288.638 kb on - strand at 1288.656 kb on + strand at 1288.662 kb on - strand at 1288.728 kb on + strand, within Dshi_1242 at 1288.753 kb on - strand, within Dshi_1242 at 1288.783 kb on - strand, within Dshi_1242 at 1288.927 kb on - strand, within Dshi_1242 at 1288.939 kb on - strand, within Dshi_1242 at 1288.952 kb on - strand, within Dshi_1242 at 1289.009 kb on + strand, within Dshi_1242 at 1289.197 kb on - strand, within Dshi_1242 at 1289.254 kb on + strand, within Dshi_1242 at 1289.257 kb on - strand, within Dshi_1242 at 1289.262 kb on - strand, within Dshi_1242 at 1289.291 kb on + strand, within Dshi_1242 at 1289.674 kb on - strand, within Dshi_1243 at 1289.833 kb on + strand, within Dshi_1243 at 1289.887 kb on + strand, within Dshi_1243 at 1290.110 kb on + strand, within Dshi_1243 at 1290.118 kb on - strand, within Dshi_1243 at 1290.205 kb on + strand, within Dshi_1243 at 1290.208 kb on - strand, within Dshi_1243 at 1290.339 kb on - strand at 1290.380 kb on + strand at 1290.563 kb on + strand, within Dshi_1244 at 1291.182 kb on - strand, within Dshi_1244 at 1291.243 kb on + strand, within Dshi_1244 at 1291.251 kb on - strand, within Dshi_1244 at 1291.274 kb on - strand, within Dshi_1244
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,288,595 - +0.2 1,288,630 + +0.1 1,288,638 - +0.9 1,288,656 + -0.2 1,288,662 - +1.3 1,288,728 + Dshi_1242 0.12 -1.8 1,288,753 - Dshi_1242 0.14 -0.2 1,288,783 - Dshi_1242 0.18 -1.7 1,288,927 - Dshi_1242 0.34 -1.9 1,288,939 - Dshi_1242 0.35 -1.5 1,288,952 - Dshi_1242 0.37 +0.3 1,289,009 + Dshi_1242 0.43 -0.6 1,289,197 - Dshi_1242 0.64 +1.8 1,289,254 + Dshi_1242 0.70 -0.3 1,289,257 - Dshi_1242 0.71 -0.1 1,289,262 - Dshi_1242 0.71 -0.7 1,289,291 + Dshi_1242 0.74 +0.6 1,289,674 - Dshi_1243 0.20 +0.2 1,289,833 + Dshi_1243 0.41 -1.0 1,289,887 + Dshi_1243 0.48 +0.6 1,290,110 + Dshi_1243 0.76 +0.3 1,290,118 - Dshi_1243 0.77 -0.2 1,290,205 + Dshi_1243 0.89 -0.8 1,290,208 - Dshi_1243 0.89 -0.6 1,290,339 - +0.6 1,290,380 + +0.6 1,290,563 + Dshi_1244 0.16 +0.3 1,291,182 - Dshi_1244 0.52 +0.8 1,291,243 + Dshi_1244 0.56 -0.5 1,291,251 - Dshi_1244 0.56 -0.2 1,291,274 - Dshi_1244 0.57 -2.1
Or see this region's nucleotide sequence