Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4986

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,910,382	+		Psyr_4984	0.39	-3.2
5,910,382	+		Psyr_4984	0.39	+0.2
5,910,382	+		Psyr_4984	0.39	+2.3
5,910,382	+		Psyr_4984	0.39	-1.5
5,910,425	+		Psyr_4984	0.46	+0.2
5,910,425	+		Psyr_4984	0.46	+0.8
5,910,425	+		Psyr_4984	0.46	-2.4
5,910,425	+		Psyr_4984	0.46	-2.2
5,910,425	+		Psyr_4984	0.46	+0.7
5,910,425	+		Psyr_4984	0.46	+1.4
5,910,425	+		Psyr_4984	0.46	-0.6
5,910,425	+		Psyr_4984	0.46	-1.4
5,910,425	+		Psyr_4984	0.46	+0.4
5,910,425	+		Psyr_4984	0.46	+2.2
5,910,425	+		Psyr_4984	0.46	-0.7
5,910,425	+		Psyr_4984	0.46	-1.6
5,910,425	+		Psyr_4984	0.46	+0.2
5,910,426	-		Psyr_4984	0.46	-1.4
5,910,426	-		Psyr_4984	0.46	+1.2
5,910,426	-		Psyr_4984	0.46	-0.7
5,910,426	-		Psyr_4984	0.46	+1.2
5,910,426	-		Psyr_4984	0.46	+0.1
5,910,426	-		Psyr_4984	0.46	-1.8
5,910,426	-		Psyr_4984	0.46	-1.7
5,910,426	-		Psyr_4984	0.46	-0.8
5,910,426	-		Psyr_4984	0.46	-1.1
5,910,426	-		Psyr_4984	0.46	+1.4
5,910,426	-		Psyr_4984	0.46	+0.4
5,910,501	+		Psyr_4984	0.59	-0.3
5,910,502	-		Psyr_4984	0.59	+0.7
5,910,537	+		Psyr_4984	0.65	-0.2
5,910,600	-		Psyr_4984	0.76	-2.5
5,910,600	-		Psyr_4984	0.76	-0.4
5,910,600	-		Psyr_4984	0.76	+0.0
5,910,767	+				+0.6
5,910,767	+				-1.2
5,910,768	-				+0.1
5,910,768	-				+0.1
5,910,780	-				-1.1
5,910,799	+				+0.3
5,910,800	-				-1.2
5,910,880	+		Psyr_4985	0.23	+1.2
5,910,880	+		Psyr_4985	0.23	-2.3
5,910,880	+		Psyr_4985	0.23	+0.4
5,910,880	+		Psyr_4985	0.23	-2.0
5,910,880	+		Psyr_4985	0.23	+2.7
5,910,880	+		Psyr_4985	0.23	+0.3
5,910,880	+		Psyr_4985	0.23	-0.2
5,910,880	+		Psyr_4985	0.23	-0.1
5,910,880	+		Psyr_4985	0.23	+0.7
5,910,881	-		Psyr_4985	0.23	+0.7
5,910,881	-		Psyr_4985	0.23	+1.0
5,910,881	-		Psyr_4985	0.23	+0.2
5,910,903	+		Psyr_4985	0.28	-0.4
5,910,904	-		Psyr_4985	0.28	+0.9
5,910,926	+		Psyr_4985	0.33	-0.7
5,910,926	+		Psyr_4985	0.33	-0.7
5,910,926	+		Psyr_4985	0.33	+0.5
5,910,926	+		Psyr_4985	0.33	-0.1
5,910,926	+		Psyr_4985	0.33	-3.3
5,910,927	-		Psyr_4985	0.33	-1.8
5,910,927	-		Psyr_4985	0.33	-0.3
5,910,927	-		Psyr_4985	0.33	+0.6
5,910,927	-		Psyr_4985	0.33	-1.0
5,910,927	-		Psyr_4985	0.33	+1.5
5,910,927	-		Psyr_4985	0.33	+0.2
5,910,927	-		Psyr_4985	0.33	+1.8
5,910,927	-		Psyr_4985	0.33	+1.0
5,910,927	-		Psyr_4985	0.33	-1.3
5,911,043	+		Psyr_4985	0.58	+0.7
5,911,043	+		Psyr_4985	0.58	+1.0
5,911,043	+		Psyr_4985	0.58	-0.1
5,911,043	+		Psyr_4985	0.58	+0.5
5,911,044	-		Psyr_4985	0.58	-0.6
5,911,044	-		Psyr_4985	0.58	+1.0
5,911,044	-		Psyr_4985	0.58	-0.7
5,911,044	-		Psyr_4985	0.58	+0.5
5,911,046	+		Psyr_4985	0.58	-1.4
5,911,046	+		Psyr_4985	0.58	+0.8
5,911,046	+		Psyr_4985	0.58	-0.2
5,911,046	+		Psyr_4985	0.58	+0.4
5,911,046	+		Psyr_4985	0.58	+1.0
5,911,046	+		Psyr_4985	0.58	-0.6
5,911,046	+		Psyr_4985	0.58	+0.4
5,911,046	+		Psyr_4985	0.58	-1.2
5,911,046	+		Psyr_4985	0.58	-0.4
5,911,046	+		Psyr_4985	0.58	+0.7
5,911,046	+		Psyr_4985	0.58	-1.1
5,911,046	+		Psyr_4985	0.58	-1.2
5,911,046	+		Psyr_4985	0.58	-0.5
5,911,046	+		Psyr_4985	0.58	+0.0
5,911,046	+		Psyr_4985	0.58	-1.8
5,911,046	+		Psyr_4985	0.58	-0.3
5,911,047	-		Psyr_4985	0.59	+0.2
5,911,047	-		Psyr_4985	0.59	+1.3
5,911,047	-		Psyr_4985	0.59	+0.8
5,911,047	-		Psyr_4985	0.59	+1.6
5,911,047	-		Psyr_4985	0.59	-1.7
5,911,047	-		Psyr_4985	0.59	+0.5
5,911,047	-		Psyr_4985	0.59	-1.5
5,911,047	-		Psyr_4985	0.59	-0.7
5,911,047	-		Psyr_4985	0.59	-0.3
5,911,047	-		Psyr_4985	0.59	-0.2
5,911,047	-		Psyr_4985	0.59	-0.4
5,911,047	-		Psyr_4985	0.59	+1.6
5,911,047	-		Psyr_4985	0.59	+0.2
5,911,047	-		Psyr_4985	0.59	-1.2
5,911,047	-		Psyr_4985	0.59	-0.6
5,911,067	+		Psyr_4985	0.63	+0.2
5,911,067	+		Psyr_4985	0.63	-1.4
5,911,068	-		Psyr_4985	0.63	+0.4
5,911,068	-		Psyr_4985	0.63	+0.4
5,911,068	-		Psyr_4985	0.63	-2.3
5,911,068	-		Psyr_4985	0.63	-1.0
5,911,070	+		Psyr_4985	0.63	-1.3
5,911,070	+		Psyr_4985	0.63	-1.1
5,911,070	+		Psyr_4985	0.63	-2.1
5,911,070	+		Psyr_4985	0.63	-1.4
5,911,071	-		Psyr_4985	0.64	-0.3
5,911,071	-		Psyr_4985	0.64	-0.4
5,911,071	-		Psyr_4985	0.64	-0.1
5,911,071	-		Psyr_4985	0.64	+0.6
5,911,117	-		Psyr_4985	0.74	-0.4
5,911,277	+				+0.5
5,911,277	+				-2.8
5,911,278	-				+1.9
5,911,278	-				+0.4
5,911,278	-				+1.2
5,911,417	-				+0.0
5,911,417	-				-0.5
5,911,417	-				+0.4
5,911,452	+				-0.6
5,911,452	+				-3.2
5,911,452	+				-0.0
5,911,452	+				+1.7
5,911,452	+				+2.7
5,911,452	+				+0.6
5,911,452	+				+1.1
5,911,452	+				-3.2
5,911,452	+				-1.7
5,911,453	-				+3.6
5,911,453	-				+0.5
5,911,453	-				+0.0
5,911,453	-				-0.1
5,911,453	-				+1.2
5,911,501	+				-0.4
5,911,501	+				-0.2
5,911,501	+				+0.2
5,911,501	+				-0.5
5,911,501	+				+0.2
5,911,501	+				+1.9
5,911,501	+				+1.4
5,911,501	+				+1.9
5,911,501	+				-0.3
5,911,501	+				+2.0
5,911,501	+				+0.9
5,911,502	-				-0.6
5,911,502	-				-2.8
5,911,502	-				+0.3
5,911,502	-				+1.8
5,911,502	-				-1.5
5,911,502	-				+0.2
5,911,502	-				-1.7
5,911,502	-				+1.2
5,911,502	-				-0.7
5,911,502	-				+0.9
5,911,502	-				-0.7
5,911,502	-				+0.8
5,911,502	-				-0.5
5,911,502	-				+0.8
5,911,502	-				-1.2
5,911,502	-				-2.2
5,911,502	-				+1.7
5,911,502	-				-2.3
5,911,502	-				+0.2
5,911,679	+		Psyr_4986	0.10	-2.5
5,911,679	+		Psyr_4986	0.10	-1.4
5,911,679	+		Psyr_4986	0.10	-1.8
5,911,679	+		Psyr_4986	0.10	-2.8
5,911,679	+		Psyr_4986	0.10	-3.2
5,911,679	+		Psyr_4986	0.10	+0.8
5,911,679	+		Psyr_4986	0.10	+0.9
5,911,679	+		Psyr_4986	0.10	+0.6
5,911,679	+		Psyr_4986	0.10	+0.1
5,911,680	-		Psyr_4986	0.10	+0.9
5,911,680	-		Psyr_4986	0.10	+1.2
5,911,680	-		Psyr_4986	0.10	+0.4
5,911,680	-		Psyr_4986	0.10	-0.4
5,911,680	-		Psyr_4986	0.10	-0.7
5,911,680	-		Psyr_4986	0.10	-1.2
5,911,680	-		Psyr_4986	0.10	+0.2
5,911,680	-		Psyr_4986	0.10	-0.1
5,911,705	+		Psyr_4986	0.11	+0.2
5,911,705	+		Psyr_4986	0.11	+1.6
5,911,747	-		Psyr_4986	0.12	+2.3
5,911,911	-		Psyr_4986	0.16	-1.2
5,911,911	-		Psyr_4986	0.16	+0.0
5,911,911	-				+0.2
5,912,035	+		Psyr_4986	0.19	+0.6
5,912,063	+		Psyr_4986	0.19	+0.7
5,912,125	+		Psyr_4986	0.21	-3.8
5,912,125	+		Psyr_4986	0.21	-0.7
5,912,130	+		Psyr_4986	0.21	+0.2
5,912,131	-		Psyr_4986	0.21	-0.8
5,912,168	+		Psyr_4986	0.22	-3.5
5,912,168	+		Psyr_4986	0.22	-1.1
5,912,169	-		Psyr_4986	0.22	-0.7
5,912,169	-		Psyr_4986	0.22	-1.0
5,912,188	+		Psyr_4986	0.22	+0.4
5,912,188	+		Psyr_4986	0.22	-1.4
5,912,188	+		Psyr_4986	0.22	-0.1
5,912,188	+		Psyr_4986	0.22	+0.3
5,912,188	+		Psyr_4986	0.22	+0.5
5,912,188	+		Psyr_4986	0.22	+0.4
5,912,189	-		Psyr_4986	0.22	-1.4
5,912,189	-		Psyr_4986	0.22	-0.5
5,912,189	-		Psyr_4986	0.22	+0.3
5,912,189	-		Psyr_4986	0.22	-1.4
5,912,189	-		Psyr_4986	0.22	-0.2
5,912,189	-		Psyr_4986	0.22	+0.7
5,912,189	-		Psyr_4986	0.22	-0.2
5,912,189	-		Psyr_4986	0.22	-1.2
5,912,189	-		Psyr_4986	0.22	-1.0
5,912,209	+		Psyr_4986	0.23	-0.8
5,912,209	+		Psyr_4986	0.23	-0.4
5,912,210	-		Psyr_4986	0.23	-1.9
5,912,236	+		Psyr_4986	0.23	+0.6
5,912,237	-		Psyr_4986	0.23	-1.4
5,912,269	+		Psyr_4986	0.24	-0.2
5,912,269	+		Psyr_4986	0.24	+0.7
5,912,270	-		Psyr_4986	0.24	-0.2
5,912,416	+		Psyr_4986	0.28	-1.4
5,912,417	-		Psyr_4986	0.28	-0.0
5,912,498	-		Psyr_4986	0.30	-0.2
5,912,505	+		Psyr_4986	0.30	+0.7
5,912,505	+		Psyr_4986	0.30	-0.0
5,912,506	-		Psyr_4986	0.30	+2.9
5,912,563	+		Psyr_4986	0.31	-1.2
5,912,563	+		Psyr_4986	0.31	+0.5
5,912,732	+		Psyr_4986	0.35	+1.2
5,912,733	-		Psyr_4986	0.35	-0.2
5,912,733	-		Psyr_4986	0.35	+0.6
5,912,733	-		Psyr_4986	0.35	-1.5
5,912,758	+		Psyr_4986	0.36	+0.7
5,912,759	-		Psyr_4986	0.36	-1.3
5,912,759	-		Psyr_4986	0.36	+0.3
5,912,759	-		Psyr_4986	0.36	-0.4
5,912,794	+		Psyr_4986	0.37	+0.1
5,912,794	+		Psyr_4986	0.37	-0.4
5,912,795	-		Psyr_4986	0.37	-1.4
5,912,795	-		Psyr_4986	0.37	-1.6
5,912,795	-		Psyr_4986	0.37	-1.0
5,912,795	-		Psyr_4986	0.37	-1.3
5,912,809	+		Psyr_4986	0.37	-0.8
5,912,809	+		Psyr_4986	0.37	+0.2
5,912,809	+		Psyr_4986	0.37	-0.7
5,912,809	+		Psyr_4986	0.37	-0.8
5,912,810	-		Psyr_4986	0.37	+2.2
5,912,810	-		Psyr_4986	0.37	-2.0
5,912,810	-		Psyr_4986	0.37	-1.2
5,912,810	-		Psyr_4986	0.37	-0.3
5,912,934	+		Psyr_4986	0.40	+0.4
5,912,947	+		Psyr_4986	0.40	-0.1
5,913,013	+		Psyr_4986	0.42	-0.3
5,913,013	+		Psyr_4986	0.42	-3.5
5,913,013	+		Psyr_4986	0.42	+2.7
5,913,013	+		Psyr_4986	0.42	-0.8
5,913,013	+		Psyr_4986	0.42	-1.0
5,913,013	+		Psyr_4986	0.42	-1.7
5,913,013	+		Psyr_4986	0.42	-0.6
5,913,014	-		Psyr_4986	0.42	+1.2
5,913,014	-		Psyr_4986	0.42	+0.8
5,913,014	-		Psyr_4986	0.42	+0.6
5,913,014	-		Psyr_4986	0.42	-1.8
5,913,014	-		Psyr_4986	0.42	-0.1
5,913,014	-		Psyr_4986	0.42	-0.1
5,913,014	-		Psyr_4986	0.42	-1.8
5,913,014	-		Psyr_4986	0.42	+0.9
5,913,071	-		Psyr_4986	0.43	+0.6
5,913,131	-		Psyr_4986	0.45	+1.8
5,913,131	-		Psyr_4986	0.45	-2.0
5,913,131	-		Psyr_4986	0.45	+0.7
5,913,131	-		Psyr_4986	0.45	+1.3
5,913,197	-		Psyr_4986	0.46	+0.6
5,913,221	+		Psyr_4986	0.47	-1.3
5,913,325	-		Psyr_4986	0.49	-0.3
5,913,325	-		Psyr_4986	0.49	-2.8
5,913,325	-		Psyr_4986	0.49	-0.7
5,913,329	-		Psyr_4986	0.49	+2.1
5,913,329	-		Psyr_4986	0.49	+1.0
5,913,329	-		Psyr_4986	0.49	-0.7
5,913,329	-		Psyr_4986	0.49	-1.0
5,913,329	-		Psyr_4986	0.49	-1.4
5,913,329	-		Psyr_4986	0.49	-1.0
5,913,329	-		Psyr_4986	0.49	-0.8
5,913,329	-		Psyr_4986	0.49	-2.2
5,913,329	-		Psyr_4986	0.49	-1.9
5,913,698	+		Psyr_4986	0.58	+0.8
5,913,698	+		Psyr_4986	0.58	+0.9
5,913,698	+		Psyr_4986	0.58	-1.6
5,913,721	+		Psyr_4986	0.59	-0.3
5,913,943	+		Psyr_4986	0.64	+0.4
5,913,944	-		Psyr_4986	0.64	-0.4
5,913,944	-		Psyr_4986	0.64	+0.1
5,913,944	-		Psyr_4986	0.64	-2.0
5,913,944	-		Psyr_4986	0.64	-1.4
5,913,944	-		Psyr_4986	0.64	+0.5
5,913,944	-		Psyr_4986	0.64	+0.5
5,913,944	-		Psyr_4986	0.64	-0.0
5,913,944	-		Psyr_4986	0.64	-0.7
5,914,031	-		Psyr_4986	0.66	+1.1
5,914,149	-		Psyr_4986	0.69	-0.1
5,914,163	-				+1.7
5,914,691	-		Psyr_4986	0.81	-2.0
5,914,691	-		Psyr_4986	0.81	+1.0
5,914,691	-		Psyr_4986	0.81	+0.3
5,914,691	-		Psyr_4986	0.81	+0.5
5,914,691	-		Psyr_4986	0.81	+0.9
5,914,691	-		Psyr_4986	0.81	-1.2
5,914,691	-		Psyr_4986	0.81	-1.4
5,914,691	-		Psyr_4986	0.81	+0.3
5,914,691	-		Psyr_4986	0.81	-0.8
5,914,691	-		Psyr_4986	0.81	+0.6
5,914,691	-		Psyr_4986	0.81	+0.1
5,914,691	-		Psyr_4986	0.81	-0.2
5,914,693	-		Psyr_4986	0.81	-0.0
5,914,693	-		Psyr_4986	0.81	-1.1
5,914,693	-		Psyr_4986	0.81	-0.6
5,914,693	-		Psyr_4986	0.81	-1.2
5,914,693	-		Psyr_4986	0.81	+1.5
5,914,693	-		Psyr_4986	0.81	-3.1
5,914,693	-		Psyr_4986	0.81	-0.8
5,914,693	-		Psyr_4986	0.81	+1.7
5,914,697	-		Psyr_4986	0.82	-1.0
5,914,697	-		Psyr_4986	0.82	-2.4
5,914,697	-		Psyr_4986	0.82	+0.6
5,914,697	-		Psyr_4986	0.82	+0.8
5,914,697	-		Psyr_4986	0.82	-3.1
5,914,942	+		Psyr_4986	0.87	+0.7
5,914,942	+		Psyr_4986	0.87	-0.3
5,914,953	+		Psyr_4986	0.88	-0.6
5,914,983	+		Psyr_4986	0.88	-2.9
5,915,018	-		Psyr_4986	0.89	+1.4
5,915,018	-		Psyr_4986	0.89	-1.3
5,915,018	-		Psyr_4986	0.89	+1.2
5,915,032	+		Psyr_4986	0.90	-1.2
5,915,032	+		Psyr_4986	0.90	-1.7
5,915,072	+				-3.2
5,915,072	+				+0.7
5,915,072	+				-0.5
5,915,077	-				-2.3
5,915,090	+				-1.0
5,915,091	-				-0.0
5,915,094	+				+0.3
5,915,099	-				-0.3
5,915,138	+				-1.2
5,915,138	+				+1.0
5,915,138	+				+0.1
5,915,168	-				-0.7
5,915,223	+				+0.9
5,915,224	-				+0.8
5,915,224	-				-0.8
5,915,224	-				-0.1
5,915,237	+				+0.3
5,915,238	-				-0.5
5,915,277	+				+0.8
5,915,278	-				+0.6
5,915,278	-				-2.9
5,915,310	-				-0.4
5,915,310	-				+0.3
5,915,331	+				+1.9
5,915,367	-				-0.3
5,915,407	-				+0.3
5,916,093	-				-0.3
5,916,093	-				+2.0
5,916,137	-				+1.8
5,916,157	-				-2.3
5,916,173	+				+1.2
5,916,174	-				+2.4
5,916,250	+				-2.3
5,916,250	+				+0.0
5,916,250	+				+1.7
5,916,250	+				+0.1
5,916,250	+				-1.4
5,916,250	+				-2.5
5,916,250	+				+0.0
5,916,250	+				-2.2
5,916,251	-				+2.0
5,916,251	-				-0.9
5,916,251	-				+0.2
5,916,251	-				+1.5
5,916,251	-				+1.1
5,916,251	-				-0.9
5,916,251	-				-0.8
5,916,251	-				-0.6
5,916,251	-				+1.1
5,916,251	-				-1.2
5,916,251	-				-1.6
5,916,251	-				-1.3
5,916,251	-				+0.5
5,916,266	+				-1.4
5,916,267	-				-2.0
5,916,382	+				-1.8
5,916,382	+				-0.6
5,916,382	+				+1.2
5,916,434	+		Psyr_4988	0.13	-0.3
5,916,435	-		Psyr_4988	0.13	+3.5
5,916,435	-		Psyr_4988	0.13	+0.1