Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4849 and Psyr_4850 are separated by 182 nucleotides Psyr_4850 and Psyr_4851 are separated by 80 nucleotides
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Psyr_4850: Psyr_4850 - Fumarylacetoacetate (FAA) hydrolase, at 5,756,826 to 5,757,491
_4850
Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990
_4851
Position (kb) 5756
5757
5758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.027 kb on + strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.028 kb on - strand, within Psyr_4849 at 5756.056 kb on + strand, within Psyr_4849 at 5756.132 kb on + strand, within Psyr_4849 at 5756.133 kb on - strand, within Psyr_4849 at 5756.182 kb on - strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.290 kb on + strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.291 kb on - strand, within Psyr_4849 at 5756.368 kb on - strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.369 kb on + strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.370 kb on - strand, within Psyr_4849 at 5756.561 kb on - strand at 5756.574 kb on - strand at 5756.595 kb on - strand at 5756.634 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.749 kb on - strand at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.284 kb on - strand, within Psyr_4850 at 5757.412 kb on + strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.437 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.485 kb on - strand at 5757.509 kb on + strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.516 kb on + strand at 5757.517 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.669 kb on + strand at 5757.669 kb on + strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.678 kb on + strand at 5757.729 kb on + strand, within Psyr_4851 at 5757.729 kb on + strand, within Psyr_4851 at 5757.730 kb on - strand, within Psyr_4851 at 5757.730 kb on - strand, within Psyr_4851 at 5757.943 kb on + strand, within Psyr_4851 at 5757.944 kb on - strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.364 kb on - strand, within Psyr_4851
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,756,027 + Psyr_4849 0.35 +3.3 5,756,027 + Psyr_4849 0.35 +0.6 5,756,027 + Psyr_4849 0.35 +0.3 5,756,028 - Psyr_4849 0.35 -0.7 5,756,028 - Psyr_4849 0.35 +0.9 5,756,028 - Psyr_4849 0.35 +0.4 5,756,056 + Psyr_4849 0.38 +0.3 5,756,132 + Psyr_4849 0.46 +1.4 5,756,133 - Psyr_4849 0.46 -1.3 5,756,182 - Psyr_4849 0.51 -0.8 5,756,290 + Psyr_4849 0.63 -3.7 5,756,290 + Psyr_4849 0.63 +0.3 5,756,290 + Psyr_4849 0.63 -0.5 5,756,290 + Psyr_4849 0.63 -2.2 5,756,290 + Psyr_4849 0.63 +0.4 5,756,290 + Psyr_4849 0.63 -0.6 5,756,291 - Psyr_4849 0.63 +0.3 5,756,291 - Psyr_4849 0.63 -0.8 5,756,291 - Psyr_4849 0.63 -0.4 5,756,291 - Psyr_4849 0.63 +0.0 5,756,291 - Psyr_4849 0.63 -2.4 5,756,291 - Psyr_4849 0.63 -0.2 5,756,291 - Psyr_4849 0.63 +0.1 5,756,368 - Psyr_4849 0.71 -0.4 5,756,369 + Psyr_4849 0.71 -0.1 5,756,369 + Psyr_4849 0.71 -0.5 5,756,369 + Psyr_4849 0.71 -1.4 5,756,369 + Psyr_4849 0.71 +0.3 5,756,370 - Psyr_4849 0.71 -0.3 5,756,370 - Psyr_4849 0.71 -0.7 5,756,370 - Psyr_4849 0.71 -1.7 5,756,370 - Psyr_4849 0.71 +0.5 5,756,561 - -0.9 5,756,574 - +0.6 5,756,595 - +0.0 5,756,634 + -0.4 5,756,748 + -0.1 5,756,748 + -0.1 5,756,748 + +1.7 5,756,749 - +0.3 5,757,219 + Psyr_4850 0.59 -1.9 5,757,219 + Psyr_4850 0.59 -0.9 5,757,219 + Psyr_4850 0.59 -0.8 5,757,219 + Psyr_4850 0.59 -1.1 5,757,283 + Psyr_4850 0.69 +0.1 5,757,283 + Psyr_4850 0.69 -1.4 5,757,284 - Psyr_4850 0.69 +0.5 5,757,412 + Psyr_4850 0.88 +1.9 5,757,413 - Psyr_4850 0.88 +1.1 5,757,413 - Psyr_4850 0.88 +0.8 5,757,413 - Psyr_4850 0.88 +1.0 5,757,417 - Psyr_4850 0.89 +0.0 5,757,417 - Psyr_4850 0.89 +0.8 5,757,417 - Psyr_4850 0.89 -0.8 5,757,437 + -0.1 5,757,472 + -0.2 5,757,472 + -1.9 5,757,472 + -1.2 5,757,472 + +0.2 5,757,472 + +0.8 5,757,473 - +0.3 5,757,473 - -0.1 5,757,473 - +0.8 5,757,473 - -1.3 5,757,473 - +0.4 5,757,485 - -1.6 5,757,509 + +1.1 5,757,510 - +0.9 5,757,510 - -1.4 5,757,516 + -0.4 5,757,517 - -0.9 5,757,526 - -1.7 5,757,526 - +0.1 5,757,526 - -1.0 5,757,642 + +0.2 5,757,642 + +1.1 5,757,642 + +0.8 5,757,642 + -1.6 5,757,642 + -0.5 5,757,642 + -0.0 5,757,643 - -1.4 5,757,643 - -0.7 5,757,643 - +2.1 5,757,643 - -0.7 5,757,669 + -0.9 5,757,669 + -0.4 5,757,670 - -0.2 5,757,670 - -0.9 5,757,670 - +0.3 5,757,670 - +1.5 5,757,670 - -1.2 5,757,670 - +0.3 5,757,670 - -0.7 5,757,670 - +0.9 5,757,678 + -0.4 5,757,729 + Psyr_4851 0.11 +0.0 5,757,729 + Psyr_4851 0.11 -0.5 5,757,730 - Psyr_4851 0.11 -2.6 5,757,730 - Psyr_4851 0.11 -0.6 5,757,943 + Psyr_4851 0.26 +0.3 5,757,944 - Psyr_4851 0.26 +0.6 5,757,987 + Psyr_4851 0.29 +1.0 5,757,987 + Psyr_4851 0.29 -0.7 5,757,987 + Psyr_4851 0.29 +0.1 5,757,988 - Psyr_4851 0.29 +1.1 5,757,988 - Psyr_4851 0.29 +0.0 5,757,988 - Psyr_4851 0.29 -0.9 5,757,988 - Psyr_4851 0.29 +0.1 5,757,988 - Psyr_4851 0.29 -0.5 5,757,988 - Psyr_4851 0.29 -1.1 5,757,988 - Psyr_4851 0.29 -1.4 5,757,988 - Psyr_4851 0.29 +0.1 5,757,988 - Psyr_4851 0.29 -2.0 5,758,013 + Psyr_4851 0.31 +3.0 5,758,013 + Psyr_4851 0.31 +1.8 5,758,013 + Psyr_4851 0.31 +0.3 5,758,014 - Psyr_4851 0.31 -1.5 5,758,014 - Psyr_4851 0.31 +1.7 5,758,133 + Psyr_4851 0.40 +0.6 5,758,133 + Psyr_4851 0.40 -2.2 5,758,133 + Psyr_4851 0.40 -2.2 5,758,133 + Psyr_4851 0.40 -0.2 5,758,133 + Psyr_4851 0.40 +0.4 5,758,133 + Psyr_4851 0.40 -0.6 5,758,134 - Psyr_4851 0.40 +0.3 5,758,134 - Psyr_4851 0.40 +0.4 5,758,134 - Psyr_4851 0.40 +0.2 5,758,134 - Psyr_4851 0.40 -0.4 5,758,134 - Psyr_4851 0.40 -0.3 5,758,134 - Psyr_4851 0.40 -0.5 5,758,134 - Psyr_4851 0.40 -0.3 5,758,137 + Psyr_4851 0.40 +1.0 5,758,137 + Psyr_4851 0.40 -1.2 5,758,137 + Psyr_4851 0.40 -0.5 5,758,137 + Psyr_4851 0.40 -0.3 5,758,137 + Psyr_4851 0.40 -1.8 5,758,137 + Psyr_4851 0.40 +0.5 5,758,137 + Psyr_4851 0.40 -2.6 5,758,137 + Psyr_4851 0.40 +0.1 5,758,138 - Psyr_4851 0.40 -1.5 5,758,138 - Psyr_4851 0.40 +0.5 5,758,138 - Psyr_4851 0.40 -2.2 5,758,138 - Psyr_4851 0.40 +1.1 5,758,138 - Psyr_4851 0.40 +0.6 5,758,138 - Psyr_4851 0.40 -0.5 5,758,138 - Psyr_4851 0.40 -0.4 5,758,364 - Psyr_4851 0.56 +4.3
Or see this region's nucleotide sequence