Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4823 and Psyr_4824 are separated by 81 nucleotides Psyr_4824 and Psyr_4825 are separated by 112 nucleotides
Psyr_4823: Psyr_4823 - Aldo/keto reductase, at 5,720,578 to 5,721,615
_4823
Psyr_4824: Psyr_4824 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,721,697 to 5,722,632
_4824
Psyr_4825: Psyr_4825 - xenobiotic compound monooxygenase, DszA family, A subunit, at 5,722,745 to 5,724,070
_4825
Position (kb) 5721
5722
5723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.949 kb on + strand, within Psyr_4823 at 5720.982 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.114 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.221 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.420 kb on - strand, within Psyr_4823 at 5721.572 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.823 kb on + strand, within Psyr_4824 at 5721.842 kb on + strand, within Psyr_4824 at 5721.843 kb on - strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.887 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.726 kb on + strand at 5722.727 kb on - strand at 5722.753 kb on + strand at 5722.753 kb on + strand at 5722.754 kb on - strand at 5722.754 kb on - strand at 5722.804 kb on - strand at 5722.804 kb on - strand at 5722.832 kb on + strand at 5722.833 kb on - strand at 5723.317 kb on - strand, within Psyr_4825 at 5723.317 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825 at 5723.518 kb on - strand, within Psyr_4825
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 5,720,915 + Psyr_4823 0.32 -2.2 5,720,915 + Psyr_4823 0.32 +0.6 5,720,915 + Psyr_4823 0.32 +1.6 5,720,916 - Psyr_4823 0.33 +1.9 5,720,916 - Psyr_4823 0.33 +1.6 5,720,916 - Psyr_4823 0.33 +1.6 5,720,916 - Psyr_4823 0.33 -0.9 5,720,916 - Psyr_4823 0.33 +2.5 5,720,949 + Psyr_4823 0.36 +1.1 5,720,982 + Psyr_4823 0.39 -0.2 5,721,026 + Psyr_4823 0.43 +2.1 5,721,026 + Psyr_4823 0.43 +0.6 5,721,027 - Psyr_4823 0.43 +0.7 5,721,027 - Psyr_4823 0.43 +0.8 5,721,114 + Psyr_4823 0.52 -1.8 5,721,122 + Psyr_4823 0.52 +0.9 5,721,122 + Psyr_4823 0.52 +0.5 5,721,122 + Psyr_4823 0.52 +1.1 5,721,122 + Psyr_4823 0.52 +0.0 5,721,122 + Psyr_4823 0.52 -2.2 5,721,122 + Psyr_4823 0.52 -1.6 5,721,122 + Psyr_4823 0.52 -2.4 5,721,122 + Psyr_4823 0.52 +0.1 5,721,122 + Psyr_4823 0.52 -2.6 5,721,122 + Psyr_4823 0.52 -1.7 5,721,122 + Psyr_4823 0.52 -0.9 5,721,122 + Psyr_4823 0.52 +1.4 5,721,123 - Psyr_4823 0.53 +2.3 5,721,123 - Psyr_4823 0.53 +0.3 5,721,123 - Psyr_4823 0.53 -1.7 5,721,206 + Psyr_4823 0.61 -0.8 5,721,206 + Psyr_4823 0.61 -0.3 5,721,206 + Psyr_4823 0.61 +2.5 5,721,206 + Psyr_4823 0.61 +0.0 5,721,207 - Psyr_4823 0.61 -2.0 5,721,207 - Psyr_4823 0.61 -0.3 5,721,221 + Psyr_4823 0.62 +0.4 5,721,269 + Psyr_4823 0.67 -0.4 5,721,269 + Psyr_4823 0.67 -1.5 5,721,269 + Psyr_4823 0.67 -0.3 5,721,269 + Psyr_4823 0.67 -0.2 5,721,269 + Psyr_4823 0.67 +0.6 5,721,269 + Psyr_4823 0.67 -1.2 5,721,269 + Psyr_4823 0.67 +1.1 5,721,269 + Psyr_4823 0.67 +0.1 5,721,269 + Psyr_4823 0.67 +0.3 5,721,269 + Psyr_4823 0.67 +1.1 5,721,269 + Psyr_4823 0.67 -2.5 5,721,270 - Psyr_4823 0.67 -1.2 5,721,270 - Psyr_4823 0.67 +1.1 5,721,270 - Psyr_4823 0.67 +1.3 5,721,270 - Psyr_4823 0.67 +1.1 5,721,273 + Psyr_4823 0.67 -0.4 5,721,273 + Psyr_4823 0.67 -2.9 5,721,273 + Psyr_4823 0.67 +2.3 5,721,274 - Psyr_4823 0.67 -1.4 5,721,274 - Psyr_4823 0.67 +0.9 5,721,274 - Psyr_4823 0.67 +0.5 5,721,274 - Psyr_4823 0.67 -2.6 5,721,274 - Psyr_4823 0.67 -0.1 5,721,419 + Psyr_4823 0.81 -0.4 5,721,419 + Psyr_4823 0.81 -0.3 5,721,419 + Psyr_4823 0.81 -1.4 5,721,420 - Psyr_4823 0.81 +0.1 5,721,572 + -1.0 5,721,608 + -1.7 5,721,608 + +0.9 5,721,608 + -0.0 5,721,608 + -1.3 5,721,608 + +3.6 5,721,608 + -1.7 5,721,608 + +1.5 5,721,608 + +0.0 5,721,608 + -0.9 5,721,608 + -1.7 5,721,608 + +0.5 5,721,608 + +0.4 5,721,608 + -0.5 5,721,609 - -1.3 5,721,609 - +0.8 5,721,609 - -0.5 5,721,609 - -0.1 5,721,823 + Psyr_4824 0.13 +1.0 5,721,842 + Psyr_4824 0.15 -0.1 5,721,843 - Psyr_4824 0.16 -0.7 5,721,886 + Psyr_4824 0.20 +1.3 5,721,886 + Psyr_4824 0.20 -1.4 5,721,887 - Psyr_4824 0.20 +0.5 5,721,895 - Psyr_4824 0.21 +0.6 5,721,895 - Psyr_4824 0.21 -1.5 5,722,001 + Psyr_4824 0.32 +0.8 5,722,001 + Psyr_4824 0.32 +1.4 5,722,001 + Psyr_4824 0.32 -0.2 5,722,001 + Psyr_4824 0.32 -0.7 5,722,002 - Psyr_4824 0.33 +0.8 5,722,002 - Psyr_4824 0.33 -1.4 5,722,002 - Psyr_4824 0.33 +0.4 5,722,002 - Psyr_4824 0.33 +1.4 5,722,076 + Psyr_4824 0.40 -0.7 5,722,076 + Psyr_4824 0.40 -0.5 5,722,076 + Psyr_4824 0.40 +0.9 5,722,076 + Psyr_4824 0.40 +0.0 5,722,076 + Psyr_4824 0.40 +0.1 5,722,076 + Psyr_4824 0.40 -0.1 5,722,077 - Psyr_4824 0.41 +0.3 5,722,077 - Psyr_4824 0.41 -1.0 5,722,077 - Psyr_4824 0.41 -1.7 5,722,079 + Psyr_4824 0.41 -1.0 5,722,079 + Psyr_4824 0.41 -1.4 5,722,079 + Psyr_4824 0.41 +0.4 5,722,079 + Psyr_4824 0.41 -0.5 5,722,080 - Psyr_4824 0.41 +0.2 5,722,080 - Psyr_4824 0.41 -1.2 5,722,152 - Psyr_4824 0.49 +0.1 5,722,152 - Psyr_4824 0.49 -0.4 5,722,165 - Psyr_4824 0.50 +1.8 5,722,165 - Psyr_4824 0.50 -1.2 5,722,212 + Psyr_4824 0.55 -2.0 5,722,212 + Psyr_4824 0.55 -0.4 5,722,212 + Psyr_4824 0.55 -1.4 5,722,212 + Psyr_4824 0.55 -0.2 5,722,213 - Psyr_4824 0.55 -0.9 5,722,213 - Psyr_4824 0.55 +0.0 5,722,213 - Psyr_4824 0.55 +1.6 5,722,337 + Psyr_4824 0.68 +1.6 5,722,337 + Psyr_4824 0.68 -0.3 5,722,337 + Psyr_4824 0.68 -0.9 5,722,338 - Psyr_4824 0.68 -1.8 5,722,338 - Psyr_4824 0.68 +1.0 5,722,338 - Psyr_4824 0.68 +1.8 5,722,726 + +1.6 5,722,727 - -0.1 5,722,753 + -0.2 5,722,753 + -0.4 5,722,754 - +1.0 5,722,754 - -1.3 5,722,804 - -2.0 5,722,804 - +0.2 5,722,832 + -2.7 5,722,833 - +0.6 5,723,317 - Psyr_4825 0.43 +0.3 5,723,317 - Psyr_4825 0.43 -0.1 5,723,518 - Psyr_4825 0.58 -0.8 5,723,518 - Psyr_4825 0.58 +0.6
Or see this region's nucleotide sequence