Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4600

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,457,672	+				+0.4
5,457,833	-		Psyr_4598	0.50	-0.8
5,457,833	-		Psyr_4598	0.50	+0.8
5,457,863	+		Psyr_4598	0.59	-0.2
5,457,863	+		Psyr_4598	0.59	-0.6
5,457,863	+		Psyr_4598	0.59	-0.7
5,457,864	-		Psyr_4598	0.59	+2.0
5,457,864	-		Psyr_4598	0.59	-3.1
5,458,053	+		Psyr_4599	0.18	-3.0
5,458,338	+				+0.8
5,458,338	+				-2.2
5,458,338	+				+2.3
5,458,339	-				+0.8
5,458,339	-				+0.6
5,458,354	+				-1.4
5,458,355	-				-1.3
5,458,507	+				+1.1
5,458,537	+				+0.5
5,458,537	+				+0.9
5,458,537	+				+1.1
5,458,537	+				+1.8
5,458,537	+				-0.9
5,458,538	-				+1.1
5,458,656	-		Psyr_4600	0.14	-0.4
5,458,747	+		Psyr_4600	0.22	+0.7
5,458,747	+		Psyr_4600	0.22	-0.9
5,458,747	+		Psyr_4600	0.22	+0.5
5,458,747	+		Psyr_4600	0.22	+1.5
5,458,747	+		Psyr_4600	0.22	-0.3
5,458,748	-		Psyr_4600	0.22	+1.1
5,458,748	-		Psyr_4600	0.22	-0.9
5,458,809	-		Psyr_4600	0.27	-2.4
5,458,840	+		Psyr_4600	0.29	+0.5
5,459,003	+		Psyr_4600	0.43	+0.7
5,459,004	-		Psyr_4600	0.43	+1.0
5,459,004	-		Psyr_4600	0.43	-0.6
5,459,004	-		Psyr_4600	0.43	-0.1
5,459,004	-		Psyr_4600	0.43	+0.5
5,459,004	-		Psyr_4600	0.43	+0.4
5,459,020	+		Psyr_4600	0.45	+0.2
5,459,020	+		Psyr_4600	0.45	+1.7
5,459,020	+		Psyr_4600	0.45	-1.0
5,459,020	+		Psyr_4600	0.45	+0.9
5,459,020	+		Psyr_4600	0.45	+2.9
5,459,020	+		Psyr_4600	0.45	+1.5
5,459,045	+		Psyr_4600	0.47	+1.6
5,459,045	+		Psyr_4600	0.47	-1.3
5,459,045	+				-0.2
5,459,045	+		Psyr_4600	0.47	+0.1
5,459,046	-		Psyr_4600	0.47	+1.5
5,459,046	-		Psyr_4600	0.47	-0.3
5,459,046	-		Psyr_4600	0.47	+0.6
5,459,046	-		Psyr_4600	0.47	+0.2
5,459,046	-		Psyr_4600	0.47	+0.2
5,459,046	-		Psyr_4600	0.47	+2.0
5,459,046	-		Psyr_4600	0.47	+0.7
5,459,046	-		Psyr_4600	0.47	+1.6
5,459,050	+		Psyr_4600	0.47	-0.4
5,459,050	+		Psyr_4600	0.47	+0.7
5,459,050	+		Psyr_4600	0.47	+0.9
5,459,050	+		Psyr_4600	0.47	+0.5
5,459,051	-		Psyr_4600	0.47	+1.3
5,459,051	-		Psyr_4600	0.47	+0.8
5,459,051	-		Psyr_4600	0.47	+1.7
5,459,051	-		Psyr_4600	0.47	-1.9
5,459,320	+		Psyr_4600	0.70	-0.1
5,459,320	+		Psyr_4600	0.70	+0.6
5,459,320	+		Psyr_4600	0.70	+0.0
5,459,320	+		Psyr_4600	0.70	-1.8
5,459,320	+		Psyr_4600	0.70	+0.3
5,459,320	+		Psyr_4600	0.70	+0.5
5,459,320	+		Psyr_4600	0.70	-0.8
5,459,320	+		Psyr_4600	0.70	+0.0
5,459,320	+		Psyr_4600	0.70	+1.1
5,459,320	+		Psyr_4600	0.70	-1.9
5,459,320	+		Psyr_4600	0.70	+0.5
5,459,320	+		Psyr_4600	0.70	+0.1
5,459,321	-		Psyr_4600	0.71	-0.9
5,459,321	-		Psyr_4600	0.71	+0.9
5,459,321	-		Psyr_4600	0.71	+1.0
5,459,612	+				+1.0
5,459,612	+				-0.4
5,459,612	+				+0.8
5,459,613	-				-0.2
5,459,613	-				-0.3
5,459,613	-				+0.5
5,459,616	+				+2.1
5,459,617	-				-1.9
5,459,617	-				+1.5
5,459,617	-				-0.9
5,459,627	+				-1.0
5,459,627	+				-2.6
5,459,628	-				-0.4
5,459,673	+				-2.4
5,459,673	+				-0.9
5,459,674	-				+1.2
5,459,679	+				+2.1
5,459,679	+				+0.9
5,459,679	+				-0.0
5,459,679	+				+1.2
5,459,680	-				-0.1
5,459,680	-				-1.5
5,459,680	-				-0.5
5,459,680	-				+1.3
5,459,713	+		Psyr_4601	0.19	+0.6
5,459,714	-		Psyr_4601	0.19	-2.2
5,459,714	-		Psyr_4601	0.19	-2.4
5,459,805	+		Psyr_4601	0.68	+0.4
5,459,848	+				-0.2
5,459,865	+				-2.4
5,459,865	+				-1.1
5,459,865	+				-0.1
5,459,865	+				-0.3
5,459,865	+				+1.1
5,459,865	+				+0.2
5,459,865	+				+0.4
5,459,865	+				+0.1
5,459,865	+				-0.7
5,459,865	+				-0.0
5,459,865	+				-0.2
5,459,865	+				+0.1
5,459,866	-				+0.1
5,459,866	-				-0.5
5,459,866	-				-1.1
5,459,866	-				-0.5
5,459,866	-				+2.1
5,459,866	-				-3.7
5,459,866	-				-1.2
5,459,866	-				+0.5
5,459,866	-				-1.5
5,459,866	-				-1.7
5,459,866	-				-1.1
5,459,866	-				-0.3
5,459,866	-				-1.1
5,459,866	-				-1.7
5,459,866	-				-1.1
5,459,866	-				-0.2
5,460,242	+		Psyr_4602	0.24	-1.0
5,460,311	+		Psyr_4602	0.39	-0.4
5,460,311	+		Psyr_4602	0.39	-1.8
5,460,403	+		Psyr_4602	0.60	+0.6
5,460,403	+		Psyr_4602	0.60	-1.3
5,460,403	+		Psyr_4602	0.60	-1.7
5,460,403	+		Psyr_4602	0.60	-1.2
5,460,403	+		Psyr_4602	0.60	-2.6
5,460,403	+		Psyr_4602	0.60	-0.9
5,460,403	+		Psyr_4602	0.60	-0.2
5,460,403	+		Psyr_4602	0.60	+1.8
5,460,403	+		Psyr_4602	0.60	+1.1
5,460,403	+		Psyr_4602	0.60	-0.1
5,460,403	+		Psyr_4602	0.60	-2.1
5,460,403	+		Psyr_4602	0.60	+0.7
5,460,403	+		Psyr_4602	0.60	+0.1
5,460,403	+		Psyr_4602	0.60	-0.7
5,460,403	+		Psyr_4602	0.60	-0.4
5,460,404	-		Psyr_4602	0.60	+2.7
5,460,404	-		Psyr_4602	0.60	+1.1
5,460,404	-		Psyr_4602	0.60	+1.9
5,460,404	-		Psyr_4602	0.60	+0.8
5,460,404	-		Psyr_4602	0.60	+0.1
5,460,404	-		Psyr_4602	0.60	+0.5
5,460,404	-		Psyr_4602	0.60	-2.1
5,460,404	-		Psyr_4602	0.60	+0.5
5,460,404	-		Psyr_4602	0.60	+1.5
5,460,404	-		Psyr_4602	0.60	-2.8
5,460,404	-		Psyr_4602	0.60	-0.2
5,460,404	-		Psyr_4602	0.60	-2.1
5,460,404	-		Psyr_4602	0.60	-1.1
5,460,404	-		Psyr_4602	0.60	-1.0
5,460,404	-		Psyr_4602	0.60	+0.8
5,460,404	-		Psyr_4602	0.60	+0.5
5,460,404	-		Psyr_4602	0.60	-1.8
5,460,404	-		Psyr_4602	0.60	+1.1
5,460,404	-		Psyr_4602	0.60	+0.3
5,460,404	-		Psyr_4602	0.60	-0.0
5,460,404	-		Psyr_4602	0.60	-0.5
5,460,404	-		Psyr_4602	0.60	+1.8
5,460,404	-		Psyr_4602	0.60	-1.2
5,460,405	+		Psyr_4602	0.61	+2.5
5,460,405	+		Psyr_4602	0.61	+0.2
5,460,405	+		Psyr_4602	0.61	+0.7
5,460,405	+		Psyr_4602	0.61	+0.6
5,460,405	+		Psyr_4602	0.61	-0.3
5,460,405	+		Psyr_4602	0.61	+0.3
5,460,405	+		Psyr_4602	0.61	+2.3
5,460,405	+		Psyr_4602	0.61	-1.7
5,460,405	+		Psyr_4602	0.61	+0.6
5,460,405	+		Psyr_4602	0.61	-1.8
5,460,405	+		Psyr_4602	0.61	+1.5
5,460,405	+		Psyr_4602	0.61	-0.2
5,460,405	+		Psyr_4602	0.61	-1.0
5,460,405	+		Psyr_4602	0.61	+2.3
5,460,405	+		Psyr_4602	0.61	+1.5
5,460,405	+		Psyr_4602	0.61	-0.4
5,460,406	-		Psyr_4602	0.61	+0.8
5,460,406	-		Psyr_4602	0.61	-0.4
5,460,406	-		Psyr_4602	0.61	-2.0
5,460,406	-		Psyr_4602	0.61	-1.4
5,460,406	-		Psyr_4602	0.61	+0.8
5,460,406	-		Psyr_4602	0.61	-0.1
5,460,406	-		Psyr_4602	0.61	-3.1
5,460,406	-		Psyr_4602	0.61	+0.3
5,460,406	-		Psyr_4602	0.61	+1.8
5,460,406	-		Psyr_4602	0.61	-0.3
5,460,406	-		Psyr_4602	0.61	+0.1
5,460,406	-		Psyr_4602	0.61	+0.7
5,460,406	-		Psyr_4602	0.61	-0.5
5,460,406	-		Psyr_4602	0.61	-0.3
5,460,407	+		Psyr_4602	0.61	+1.9
5,460,407	+		Psyr_4602	0.61	-0.4
5,460,407	+		Psyr_4602	0.61	+0.7
5,460,407	+		Psyr_4602	0.61	+0.3
5,460,407	+		Psyr_4602	0.61	+0.1
5,460,407	+		Psyr_4602	0.61	+1.1
5,460,407	+		Psyr_4602	0.61	-1.5
5,460,407	+		Psyr_4602	0.61	+0.6
5,460,407	+		Psyr_4602	0.61	-0.1
5,460,407	+		Psyr_4602	0.61	-2.5
5,460,407	+		Psyr_4602	0.61	-0.6
5,460,408	-		Psyr_4602	0.61	-0.4
5,460,408	-		Psyr_4602	0.61	+0.4
5,460,408	-		Psyr_4602	0.61	+0.1
5,460,408	-		Psyr_4602	0.61	-0.9
5,460,408	-		Psyr_4602	0.61	-3.4
5,460,408	-		Psyr_4602	0.61	-1.1
5,460,408	-		Psyr_4602	0.61	+1.9
5,460,467	+		Psyr_4602	0.75	-0.0
5,460,467	+		Psyr_4602	0.75	+0.1
5,460,565	+				-1.9
5,460,565	+				+0.5
5,460,565	+				+1.5
5,460,565	+				+1.0
5,460,565	+				-0.2
5,460,566	-				-0.5
5,460,566	-				+2.4
5,460,566	-				-0.2
5,460,566	-				+0.9
5,460,594	-				+0.7
5,460,594	-				+1.5
5,460,594	-				+0.3
5,460,647	+				-0.4