Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4065

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
4,848,644	+		Psyr_4064	0.11	-1.9
4,848,644	+		Psyr_4064	0.11	-0.0
4,848,644	+		Psyr_4064	0.11	+1.7
4,848,644	+		Psyr_4064	0.11	+0.7
4,848,645	-		Psyr_4064	0.11	+0.6
4,848,645	-		Psyr_4064	0.11	+1.0
4,848,819	+		Psyr_4064	0.28	-1.1
4,848,819	+		Psyr_4064	0.28	+0.5
4,848,820	-		Psyr_4064	0.28	-1.7
4,848,820	-		Psyr_4064	0.28	+0.1
4,848,820	-		Psyr_4064	0.28	+0.4
4,848,820	-		Psyr_4064	0.28	+0.1
4,848,944	+		Psyr_4064	0.39	+0.8
4,848,950	+		Psyr_4064	0.40	+0.3
4,848,950	+		Psyr_4064	0.40	+0.9
4,848,950	+		Psyr_4064	0.40	+0.4
4,848,950	+		Psyr_4064	0.40	+1.1
4,848,950	+		Psyr_4064	0.40	-1.7
4,848,950	+		Psyr_4064	0.40	+1.9
4,848,950	+		Psyr_4064	0.40	+1.3
4,848,950	+		Psyr_4064	0.40	-0.5
4,848,950	+		Psyr_4064	0.40	-1.5
4,848,950	+		Psyr_4064	0.40	-1.7
4,848,950	+		Psyr_4064	0.40	-0.3
4,848,950	+		Psyr_4064	0.40	+1.1
4,848,951	-		Psyr_4064	0.40	-1.5
4,848,951	-		Psyr_4064	0.40	+1.0
4,848,951	-		Psyr_4064	0.40	+0.6
4,848,951	-		Psyr_4064	0.40	-1.7
4,848,951	-		Psyr_4064	0.40	-1.0
4,848,951	-		Psyr_4064	0.40	-0.6
4,848,951	-		Psyr_4064	0.40	+0.4
4,848,951	-		Psyr_4064	0.40	-0.3
4,848,951	-		Psyr_4064	0.40	+0.6
4,848,951	-		Psyr_4064	0.40	+1.3
4,848,951	-		Psyr_4064	0.40	+1.3
4,848,951	-		Psyr_4064	0.40	-2.0
4,848,951	-		Psyr_4064	0.40	+0.9
4,849,597	+				+1.6
4,849,597	+				+0.1
4,849,597	+				+2.1
4,849,597	+				+0.5
4,849,597	+				-2.3
4,849,597	+				-1.4
4,849,597	+				-0.9
4,849,598	-				+0.5
4,849,598	-				-1.9
4,849,598	-				-1.6
4,849,598	-				-2.2
4,849,598	-				+0.5
4,849,598	-				-1.8
4,849,598	-				+1.2
4,849,598	-				-1.2
4,849,598	-				-1.0
4,849,598	-				+0.7
4,849,598	-				+2.5
4,849,741	-		Psyr_4065	0.12	+0.1
4,849,774	+		Psyr_4065	0.15	-0.2
4,849,862	+		Psyr_4065	0.23	+0.2
4,849,862	+		Psyr_4065	0.23	-0.2
4,849,863	-		Psyr_4065	0.23	-1.1
4,849,872	+		Psyr_4065	0.24	+0.5
4,849,872	+		Psyr_4065	0.24	+1.1
4,849,872	+		Psyr_4065	0.24	-0.6
4,849,873	-		Psyr_4065	0.24	+2.6
4,849,938	+		Psyr_4065	0.30	-0.6
4,849,939	-		Psyr_4065	0.30	+1.4
4,849,939	-		Psyr_4065	0.30	+2.4
4,849,978	-		Psyr_4065	0.34	+0.1
4,850,017	+		Psyr_4065	0.37	+0.9
4,850,269	+		Psyr_4065	0.60	+0.6
4,850,427	+		Psyr_4065	0.74	-0.4
4,850,428	-		Psyr_4065	0.74	-0.7
4,850,428	-		Psyr_4065	0.74	+1.0
4,850,428	-		Psyr_4065	0.74	+1.4
4,850,428	-		Psyr_4065	0.74	-0.1
4,850,446	+		Psyr_4065	0.76	+1.0
4,850,447	-		Psyr_4065	0.76	-0.1
4,850,619	+				+0.5
4,850,619	+				+0.1
4,850,619	+				+1.1
4,850,619	+				+1.1
4,850,619	+				+1.2
4,850,619	+				-0.7
4,850,619	+				+0.2
4,850,620	-				-1.9
4,850,620	-				-0.7
4,850,620	-				-0.5
4,850,620	-				+0.7
4,850,620	-				-0.5
4,850,620	-				-1.3
4,850,709	+				+0.6
4,850,713	+				-0.3
4,850,713	+				-1.5
4,850,713	+				-1.0
4,850,714	-				+0.8
4,850,714	-				-1.1
4,850,714	-				+0.1
4,850,714	-				-1.5
4,850,766	+		Psyr_4066	0.15	+0.8
4,850,766	+		Psyr_4066	0.15	+0.1
4,850,766	+		Psyr_4066	0.15	+0.5
4,850,766	+		Psyr_4066	0.15	+0.2
4,850,766	+				-0.9
4,850,766	+		Psyr_4066	0.15	-0.4
4,850,766	+		Psyr_4066	0.15	-0.2
4,850,766	+		Psyr_4066	0.15	-1.6
4,850,767	-		Psyr_4066	0.15	-1.2
4,850,767	-		Psyr_4066	0.15	+0.5
4,850,767	-		Psyr_4066	0.15	+0.6
4,850,929	+		Psyr_4066	0.86	-0.0
4,850,952	-				+0.5
4,850,977	-				-0.9
4,850,977	-				-1.5
4,851,005	+				-0.6
4,851,005	+				-2.5
4,851,063	+		Psyr_4067	0.15	-1.6
4,851,185	+		Psyr_4067	0.32	+0.4
4,851,185	+		Psyr_4067	0.32	+1.5
4,851,185	+		Psyr_4067	0.32	-2.8
4,851,185	+		Psyr_4067	0.32	-1.7
4,851,185	+		Psyr_4067	0.32	-0.5
4,851,185	+		Psyr_4067	0.32	-0.5
4,851,185	+		Psyr_4067	0.32	+0.4
4,851,185	+		Psyr_4067	0.32	-1.0
4,851,185	+		Psyr_4067	0.32	+1.1
4,851,185	+		Psyr_4067	0.32	+0.5
4,851,185	+		Psyr_4067	0.32	-1.2
4,851,186	-		Psyr_4067	0.32	-0.2
4,851,186	-		Psyr_4067	0.32	+0.4
4,851,186	-		Psyr_4067	0.32	-0.9
4,851,186	-		Psyr_4067	0.32	-0.9
4,851,260	+		Psyr_4067	0.42	-0.5
4,851,260	+		Psyr_4067	0.42	-0.6
4,851,260	+		Psyr_4067	0.42	-0.7
4,851,261	-		Psyr_4067	0.42	-0.9
4,851,261	-		Psyr_4067	0.42	-3.0
4,851,261	-		Psyr_4067	0.42	+1.0
4,851,261	-		Psyr_4067	0.42	-0.9
4,851,454	+		Psyr_4067	0.69	+0.0
4,851,455	-		Psyr_4067	0.69	-0.5
4,851,455	-		Psyr_4067	0.69	+0.5
4,851,492	-		Psyr_4067	0.74	-0.1
4,851,492	-		Psyr_4067	0.74	+0.9
4,851,495	+		Psyr_4067	0.75	+0.7
4,851,495	+		Psyr_4067	0.75	-0.3
4,851,495	+		Psyr_4067	0.75	+0.5
4,851,495	+		Psyr_4067	0.75	+0.1
4,851,496	-		Psyr_4067	0.75	+0.8
4,851,496	-		Psyr_4067	0.75	+1.1
4,851,496	-		Psyr_4067	0.75	+0.5
4,851,496	-		Psyr_4067	0.75	-0.4
4,851,496	-		Psyr_4067	0.75	-1.5
4,851,496	-		Psyr_4067	0.75	-1.9
4,851,518	+		Psyr_4067	0.78	-2.0
4,851,518	+		Psyr_4067	0.78	+0.1
4,851,684	+				-0.8
4,851,691	+				+0.3
4,851,691	+				-0.6
4,851,691	+				+1.4
4,851,691	+				-1.1
4,851,691	+				-1.4
4,851,691	+				-0.3
4,851,692	-				-1.3
4,851,692	-				-0.2
4,851,692	-				+0.3
4,851,692	-				-0.9
4,851,696	-				-0.1
4,851,696	-				-1.4
4,851,702	+				-0.3
4,851,702	+				+0.4
4,851,702	+				+0.6
4,851,702	+				+0.5
4,851,702	+				-1.4
4,851,702	+				+0.3
4,851,702	+				-2.6
4,851,702	+				+1.1
4,851,702	+				-0.2
4,851,702	+				-0.4
4,851,702	+				+0.0
4,851,702	+				+0.2
4,851,702	+				+0.1
4,851,703	-				-2.4
4,851,703	-				-0.1
4,851,703	-				-2.4
4,851,703	-				-3.3
4,851,703	-				-0.3
4,851,703	-				+0.4
4,851,703	-				+0.6
4,851,703	-				-0.8
4,851,703	-				-0.4
4,851,703	-				-0.6
4,851,703	-				-1.9
4,851,703	-				+0.0
4,851,703	-				-0.3