Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1625

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,825,212	+		Psyr_1623	0.70	-0.8
1,825,212	+		Psyr_1623	0.70	+1.6
1,825,212	+		Psyr_1623	0.70	+0.9
1,825,212	+		Psyr_1623	0.70	-0.8
1,825,212	+		Psyr_1623	0.70	+0.3
1,825,212	+		Psyr_1623	0.70	-0.6
1,825,212	+		Psyr_1623	0.70	+2.1
1,825,213	-		Psyr_1623	0.70	-0.4
1,825,213	-		Psyr_1623	0.70	+0.5
1,825,213	-		Psyr_1623	0.70	+0.5
1,825,214	+		Psyr_1623	0.70	+0.2
1,825,462	+				-2.4
1,825,807	-		Psyr_1624	0.57	-0.0
1,825,807	-		Psyr_1624	0.57	+1.3
1,825,891	-		Psyr_1624	0.75	-1.3
1,825,891	-		Psyr_1624	0.75	+2.1
1,825,891	-		Psyr_1624	0.75	-0.4
1,825,899	+		Psyr_1624	0.77	-1.9
1,825,900	-		Psyr_1624	0.77	-3.0
1,825,980	+				+0.9
1,825,981	+				-0.3
1,825,982	-				-1.3
1,826,038	+				+2.2
1,826,039	-				+1.2
1,826,039	-				-0.5
1,826,135	+				-0.4
1,826,136	-				-1.8
1,826,136	-				-2.7
1,826,252	+				-0.6
1,826,304	-				-0.3
1,826,324	+				+0.8
1,826,324	+				+1.3
1,826,325	-				-0.9
1,826,325	-				-2.7
1,826,389	+				-1.0
1,826,389	+				-0.3
1,826,389	+				+0.8
1,826,474	+		Psyr_1625	0.12	+0.3
1,826,474	+		Psyr_1625	0.12	-0.0
1,826,495	+		Psyr_1625	0.13	-3.0
1,826,495	+		Psyr_1625	0.13	+0.4
1,826,496	-		Psyr_1625	0.13	+0.4
1,826,496	-		Psyr_1625	0.13	-2.3
1,826,496	-		Psyr_1625	0.13	-0.1
1,826,558	+		Psyr_1625	0.15	-0.1
1,826,558	+		Psyr_1625	0.15	-2.0
1,826,558	+		Psyr_1625	0.15	-0.8
1,826,558	+		Psyr_1625	0.15	-2.6
1,826,559	-		Psyr_1625	0.15	-1.0
1,826,559	-		Psyr_1625	0.15	+1.9
1,826,559	-		Psyr_1625	0.15	-1.1
1,826,560	+		Psyr_1625	0.15	+2.3
1,826,561	-		Psyr_1625	0.16	-1.5
1,826,561	-		Psyr_1625	0.16	+0.3
1,826,601	-		Psyr_1625	0.17	-1.2
1,826,601	-		Psyr_1625	0.17	-3.1
1,826,753	+		Psyr_1625	0.23	+1.0
1,826,774	+		Psyr_1625	0.23	+0.6
1,826,774	+		Psyr_1625	0.23	+0.7
1,827,120	-		Psyr_1625	0.36	-0.3
1,827,120	-		Psyr_1625	0.36	-1.0
1,827,120	-		Psyr_1625	0.36	+0.8
1,827,140	+		Psyr_1625	0.37	-0.9
1,827,141	-		Psyr_1625	0.37	-0.3
1,827,141	-		Psyr_1625	0.37	-1.2
1,827,263	+		Psyr_1625	0.42	-0.0
1,827,264	-		Psyr_1625	0.42	-1.3
1,827,494	+		Psyr_1625	0.50	-2.5
1,827,779	+		Psyr_1625	0.61	+1.3
1,827,779	+		Psyr_1625	0.61	+0.7
1,827,779	+		Psyr_1625	0.61	-2.3
1,827,780	-		Psyr_1625	0.61	-1.7
1,827,780	-		Psyr_1625	0.61	+0.2
1,827,780	-		Psyr_1625	0.61	+0.4
1,827,780	-		Psyr_1625	0.61	-0.6
1,827,809	+		Psyr_1625	0.62	+1.1
1,827,810	-		Psyr_1625	0.62	+1.4
1,827,810	-		Psyr_1625	0.62	+0.4
1,827,812	+		Psyr_1625	0.62	-1.6
1,827,812	+		Psyr_1625	0.62	-1.7
1,827,812	+		Psyr_1625	0.62	+1.7
1,827,812	+		Psyr_1625	0.62	-0.8
1,827,812	+		Psyr_1625	0.62	+0.7
1,827,812	+		Psyr_1625	0.62	+0.7
1,827,813	-		Psyr_1625	0.62	+0.2
1,827,813	-		Psyr_1625	0.62	-2.3
1,827,813	-		Psyr_1625	0.62	-0.4
1,827,813	-		Psyr_1625	0.62	+2.2
1,827,813	-		Psyr_1625	0.62	-2.8
1,827,813	-		Psyr_1625	0.62	-0.6
1,827,892	+		Psyr_1625	0.65	+0.1
1,827,892	+		Psyr_1625	0.65	+0.5
1,827,893	-		Psyr_1625	0.65	+1.0
1,827,932	+		Psyr_1625	0.67	-0.8
1,827,932	+		Psyr_1625	0.67	+1.0
1,827,933	-		Psyr_1625	0.67	+0.2
1,827,933	-		Psyr_1625	0.67	-2.5
1,827,933	-		Psyr_1625	0.67	+0.5
1,827,933	-		Psyr_1625	0.67	-0.4
1,827,934	+		Psyr_1625	0.67	+0.6
1,827,934	+		Psyr_1625	0.67	-0.5
1,827,934	+		Psyr_1625	0.67	-0.9
1,827,934	+		Psyr_1625	0.67	+0.4
1,827,935	-		Psyr_1625	0.67	+0.8
1,827,935	-		Psyr_1625	0.67	-0.6
1,827,941	+		Psyr_1625	0.67	+0.6
1,828,174	+		Psyr_1625	0.76	+0.4
1,828,174	+		Psyr_1625	0.76	-0.2
1,828,174	+		Psyr_1625	0.76	-1.2
1,828,174	+		Psyr_1625	0.76	-2.0
1,828,174	+		Psyr_1625	0.76	-1.8
1,828,175	-		Psyr_1625	0.76	+0.2
1,828,175	-		Psyr_1625	0.76	-0.0
1,828,175	-		Psyr_1625	0.76	-0.6
1,828,175	-		Psyr_1625	0.76	-0.5
1,828,196	-		Psyr_1625	0.77	+3.2
1,828,196	-		Psyr_1625	0.77	+1.0
1,828,196	-		Psyr_1625	0.77	-1.0
1,828,196	-		Psyr_1625	0.77	-1.8
1,828,199	+		Psyr_1625	0.77	-1.5
1,828,199	+		Psyr_1625	0.77	-1.7
1,828,199	+		Psyr_1625	0.77	-1.8
1,828,199	+		Psyr_1625	0.77	+0.7
1,828,199	+		Psyr_1625	0.77	-0.2
1,828,199	+		Psyr_1625	0.77	+0.7
1,828,199	+		Psyr_1625	0.77	-2.0
1,828,199	+		Psyr_1625	0.77	+1.1
1,828,199	+		Psyr_1625	0.77	+0.2
1,828,199	+		Psyr_1625	0.77	-1.0
1,828,199	+		Psyr_1625	0.77	-0.3
1,828,199	+		Psyr_1625	0.77	-0.7
1,828,199	+		Psyr_1625	0.77	-0.1
1,828,199	+		Psyr_1625	0.77	-0.0
1,828,199	+		Psyr_1625	0.77	-1.6
1,828,199	+		Psyr_1625	0.77	-0.2
1,828,199	+		Psyr_1625	0.77	-0.0
1,828,200	-		Psyr_1625	0.77	-1.0
1,828,200	-		Psyr_1625	0.77	+0.2
1,828,200	-		Psyr_1625	0.77	+0.1
1,828,200	-		Psyr_1625	0.77	-1.1
1,828,200	-		Psyr_1625	0.77	-2.7
1,828,200	-		Psyr_1625	0.77	+0.2
1,828,200	-		Psyr_1625	0.77	-3.3
1,828,200	-		Psyr_1625	0.77	-0.4
1,828,200	-		Psyr_1625	0.77	-0.1
1,828,200	-		Psyr_1625	0.77	+0.3
1,828,200	-		Psyr_1625	0.77	+0.6
1,828,200	-		Psyr_1625	0.77	+0.0
1,828,200	-		Psyr_1625	0.77	-1.1
1,828,200	-		Psyr_1625	0.77	+0.2
1,828,200	-		Psyr_1625	0.77	+1.1
1,828,200	-		Psyr_1625	0.77	-0.5
1,828,202	+		Psyr_1625	0.77	-0.8
1,828,203	-		Psyr_1625	0.77	+0.4
1,828,203	-		Psyr_1625	0.77	-0.7
1,828,205	+		Psyr_1625	0.77	-0.2
1,828,205	+		Psyr_1625	0.77	-0.9
1,828,205	+		Psyr_1625	0.77	-2.7
1,828,205	+		Psyr_1625	0.77	-0.6
1,828,205	+		Psyr_1625	0.77	-0.2
1,828,205	+		Psyr_1625	0.77	+0.7
1,828,205	+		Psyr_1625	0.77	+1.3
1,828,205	+		Psyr_1625	0.77	-2.5
1,828,205	+		Psyr_1625	0.77	-1.9
1,828,205	+		Psyr_1625	0.77	-1.9
1,828,205	+		Psyr_1625	0.77	-2.6
1,828,206	-		Psyr_1625	0.77	-0.8
1,828,206	-		Psyr_1625	0.77	+2.0
1,828,206	-		Psyr_1625	0.77	-0.4
1,828,206	-		Psyr_1625	0.77	+1.2
1,828,206	-		Psyr_1625	0.77	-0.3
1,828,206	-		Psyr_1625	0.77	-0.2
1,828,206	-		Psyr_1625	0.77	-1.6
1,828,206	-		Psyr_1625	0.77	+0.2
1,828,206	-		Psyr_1625	0.77	-0.6
1,828,206	-		Psyr_1625	0.77	+2.5
1,828,206	-		Psyr_1625	0.77	-0.9
1,828,206	-		Psyr_1625	0.77	+1.2
1,828,206	-		Psyr_1625	0.77	+1.2
1,828,206	-		Psyr_1625	0.77	+0.7
1,828,229	+		Psyr_1625	0.78	-0.3
1,828,230	-		Psyr_1625	0.78	-1.3
1,828,284	-		Psyr_1625	0.80	-1.1
1,828,562	+				+0.7
1,828,562	+				-0.3
1,828,563	-				-1.3
1,828,563	-				-0.2
1,828,599	+				-2.2
1,828,691	+				-2.8
1,828,692	-				-3.9
1,828,767	+				+0.3
1,828,768	-				-2.4
1,828,768	-				+0.8
1,828,827	+				-0.3
1,828,827	+				-0.6
1,829,067	+		Psyr_1626	0.18	-0.3
1,829,096	+		Psyr_1626	0.21	-0.7
1,829,096	+		Psyr_1626	0.21	-1.5
1,829,149	+		Psyr_1626	0.27	+0.7
1,829,150	-		Psyr_1626	0.28	-0.9
1,829,150	-		Psyr_1626	0.28	-3.0
1,829,150	-		Psyr_1626	0.28	-0.4
1,829,155	+		Psyr_1626	0.28	-0.5
1,829,155	+		Psyr_1626	0.28	-0.7
1,829,156	-		Psyr_1626	0.28	+0.3
1,829,156	-		Psyr_1626	0.28	-3.3
1,829,156	-		Psyr_1626	0.28	-1.1
1,829,156	-		Psyr_1626	0.28	+1.3
1,829,156	-		Psyr_1626	0.28	-0.6
1,829,156	-		Psyr_1626	0.28	-3.6
1,829,196	-		Psyr_1626	0.33	-1.0
1,829,214	-		Psyr_1626	0.35	-3.2
1,829,227	+		Psyr_1626	0.37	+2.3
1,829,227	+		Psyr_1626	0.37	-0.7
1,829,228	-		Psyr_1626	0.37	-0.6
1,829,228	-		Psyr_1626	0.37	-0.0
1,829,228	-		Psyr_1626	0.37	-0.1
1,829,228	-		Psyr_1626	0.37	-0.2
1,829,228	-		Psyr_1626	0.37	-1.0
1,829,228	-		Psyr_1626	0.37	-1.9
1,829,253	+		Psyr_1626	0.40	-1.2
1,829,253	+		Psyr_1626	0.40	-0.1
1,829,334	-		Psyr_1626	0.49	-0.5
1,829,334	-		Psyr_1626	0.49	-0.6
1,829,334	-		Psyr_1626	0.49	-1.2
1,829,365	+		Psyr_1626	0.53	+1.7
1,829,365	+		Psyr_1626	0.53	-0.9
1,829,398	-		Psyr_1626	0.57	+0.3
1,829,560	+		Psyr_1626	0.76	+0.8
1,829,560	+		Psyr_1626	0.76	-0.0
1,829,560	+		Psyr_1626	0.76	-1.0
1,829,560	+		Psyr_1626	0.76	-1.6
1,829,560	+		Psyr_1626	0.76	+1.1
1,829,560	+		Psyr_1626	0.76	-1.1
1,829,561	-		Psyr_1626	0.76	+1.6
1,829,561	-		Psyr_1626	0.76	+0.8
1,829,561	-		Psyr_1626	0.76	+0.6
1,829,561	-		Psyr_1626	0.76	+1.0
1,829,561	-		Psyr_1626	0.76	+0.5
1,829,561	-		Psyr_1626	0.76	-2.7
1,829,561	-		Psyr_1626	0.76	+1.6
1,829,611	+		Psyr_1626	0.82	-0.8
1,829,611	+		Psyr_1626	0.82	-0.4
1,829,611	+		Psyr_1626	0.82	+0.6
1,829,611	+		Psyr_1626	0.82	+0.3
1,829,611	+		Psyr_1626	0.82	-2.6
1,829,611	+		Psyr_1626	0.82	+0.2
1,829,612	-		Psyr_1626	0.82	+0.8
1,829,612	-		Psyr_1626	0.82	-3.1
1,829,612	-		Psyr_1626	0.82	+1.0
1,829,753	+				+1.1
1,829,797	+				+1.2
1,829,812	+				-2.9
1,829,813	-				+0.2
1,829,813	-				+1.2