Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0693 and Psyr_0694 overlap by 7 nucleotides Psyr_0694 and Psyr_0695 overlap by 4 nucleotides Psyr_0695 and Psyr_0696 are separated by 235 nucleotides
Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623
_0693
Psyr_0694: Psyr_0694 - ABC transporter, at 798,617 to 799,414
_0694
Psyr_0695: Psyr_0695 - extracellular solute-binding protein, family 3, at 799,411 to 800,262
_0695
Psyr_0696: Psyr_0696 - selenophosphate synthase, at 800,498 to 801,532
_0696
Position (kb) 799
800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 798.510 kb on + strand, within Psyr_0693 at 798.687 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.688 kb on - strand at 798.688 kb on - strand at 798.688 kb on - strand at 798.930 kb on + strand, within Psyr_0694 at 798.930 kb on + strand, within Psyr_0694 at 798.930 kb on + strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 798.931 kb on - strand, within Psyr_0694 at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.457 kb on + strand at 799.458 kb on - strand at 799.458 kb on - strand at 799.458 kb on - strand at 799.595 kb on - strand, within Psyr_0695 at 799.616 kb on + strand, within Psyr_0695 at 799.617 kb on - strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.817 kb on + strand, within Psyr_0695 at 799.818 kb on - strand, within Psyr_0695 at 799.818 kb on - strand, within Psyr_0695 at 799.955 kb on - strand, within Psyr_0695 at 799.955 kb on - strand, within Psyr_0695 at 800.001 kb on + strand, within Psyr_0695 at 800.002 kb on - strand, within Psyr_0695 at 800.114 kb on + strand, within Psyr_0695 at 800.250 kb on + strand at 800.360 kb on + strand at 800.360 kb on + strand at 800.361 kb on - strand at 800.361 kb on - strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.362 kb on + strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.363 kb on - strand at 800.442 kb on + strand at 800.657 kb on + strand, within Psyr_0696 at 800.658 kb on - strand, within Psyr_0696 at 800.658 kb on - strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.771 kb on + strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 800.772 kb on - strand, within Psyr_0696 at 801.017 kb on + strand, within Psyr_0696 at 801.017 kb on + strand, within Psyr_0696 at 801.018 kb on - strand, within Psyr_0696 at 801.018 kb on - strand, within Psyr_0696 at 801.018 kb on - strand, within Psyr_0696 at 801.116 kb on - strand, within Psyr_0696 at 801.116 kb on - strand, within Psyr_0696 at 801.248 kb on + strand, within Psyr_0696 at 801.248 kb on + strand, within Psyr_0696 at 801.249 kb on - strand, within Psyr_0696 at 801.249 kb on - strand, within Psyr_0696 at 801.249 kb on - strand, within Psyr_0696 at 801.249 kb on - strand, within Psyr_0696
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 798,510 + Psyr_0693 0.86 -0.3 798,687 + -0.3 798,687 + -1.5 798,687 + -1.9 798,688 - +2.9 798,688 - -1.5 798,688 - +0.4 798,930 + Psyr_0694 0.39 +0.2 798,930 + Psyr_0694 0.39 -0.4 798,930 + Psyr_0694 0.39 -0.3 798,931 - Psyr_0694 0.39 -2.2 798,931 - Psyr_0694 0.39 -0.8 798,931 - Psyr_0694 0.39 -0.0 798,931 - Psyr_0694 0.39 -0.1 799,457 + -0.4 799,457 + -0.4 799,457 + +0.7 799,457 + -0.1 799,457 + -0.6 799,457 + -0.5 799,457 + -0.1 799,458 - -0.7 799,458 - -1.6 799,458 - +1.1 799,595 - Psyr_0695 0.22 +2.3 799,616 + Psyr_0695 0.24 -1.6 799,617 - Psyr_0695 0.24 -1.9 799,817 + Psyr_0695 0.48 -0.8 799,817 + Psyr_0695 0.48 -1.9 799,817 + Psyr_0695 0.48 -1.5 799,817 + Psyr_0695 0.48 +1.7 799,818 - Psyr_0695 0.48 -2.2 799,818 - Psyr_0695 0.48 -2.0 799,955 - Psyr_0695 0.64 +2.1 799,955 - Psyr_0695 0.64 -0.9 800,001 + Psyr_0695 0.69 -1.6 800,002 - Psyr_0695 0.69 -0.9 800,114 + Psyr_0695 0.83 -0.1 800,250 + -1.0 800,360 + +2.3 800,360 + -1.5 800,361 - -1.5 800,361 - +2.5 800,362 + -3.8 800,362 + -0.1 800,362 + -0.2 800,362 + +0.1 800,362 + -0.9 800,362 + -2.4 800,362 + +1.1 800,363 - +1.4 800,363 - -1.5 800,363 - -1.1 800,363 - +1.0 800,363 - +0.1 800,363 - -3.4 800,363 - +1.1 800,363 - +0.3 800,363 - -0.1 800,363 - +1.2 800,363 - +0.9 800,363 - +2.0 800,363 - +1.6 800,442 + -1.1 800,657 + Psyr_0696 0.15 +0.6 800,658 - Psyr_0696 0.15 +1.5 800,658 - Psyr_0696 0.15 -1.6 800,771 + Psyr_0696 0.26 +0.9 800,771 + Psyr_0696 0.26 +2.4 800,771 + Psyr_0696 0.26 -2.2 800,771 + Psyr_0696 0.26 -0.3 800,771 + Psyr_0696 0.26 -0.5 800,771 + Psyr_0696 0.26 -0.7 800,771 + Psyr_0696 0.26 -1.4 800,771 + Psyr_0696 0.26 -0.0 800,771 + Psyr_0696 0.26 +1.1 800,771 + Psyr_0696 0.26 -0.6 800,771 + Psyr_0696 0.26 -0.3 800,771 + Psyr_0696 0.26 +1.1 800,771 + Psyr_0696 0.26 -0.3 800,771 + Psyr_0696 0.26 -0.3 800,771 + Psyr_0696 0.26 -1.1 800,771 + Psyr_0696 0.26 -0.6 800,771 + Psyr_0696 0.26 +0.4 800,771 + Psyr_0696 0.26 -0.7 800,772 - Psyr_0696 0.26 -0.6 800,772 - Psyr_0696 0.26 -2.0 800,772 - Psyr_0696 0.26 +1.0 800,772 - Psyr_0696 0.26 -0.2 800,772 - Psyr_0696 0.26 +1.1 800,772 - Psyr_0696 0.26 -0.2 800,772 - Psyr_0696 0.26 +1.1 800,772 - Psyr_0696 0.26 +0.6 800,772 - Psyr_0696 0.26 -2.0 800,772 - Psyr_0696 0.26 +1.3 800,772 - Psyr_0696 0.26 +0.6 800,772 - Psyr_0696 0.26 +0.3 800,772 - Psyr_0696 0.26 +0.9 800,772 - Psyr_0696 0.26 -0.7 800,772 - Psyr_0696 0.26 -1.5 801,017 + Psyr_0696 0.50 +0.3 801,017 + Psyr_0696 0.50 -0.5 801,018 - Psyr_0696 0.50 +0.7 801,018 - Psyr_0696 0.50 -0.9 801,018 - Psyr_0696 0.50 +0.5 801,116 - Psyr_0696 0.60 -3.2 801,116 - Psyr_0696 0.60 +0.4 801,248 + Psyr_0696 0.72 +0.3 801,248 + Psyr_0696 0.72 -1.1 801,249 - Psyr_0696 0.73 -0.2 801,249 - Psyr_0696 0.73 +1.4 801,249 - Psyr_0696 0.73 +0.1 801,249 - Psyr_0696 0.73 -0.1
Or see this region's nucleotide sequence