Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0662 and Psyr_0663 are separated by 77 nucleotides Psyr_0663 and Psyr_0664 are separated by 273 nucleotides
Psyr_0662: Psyr_0662 - 2OG-Fe(II) oxygenase superfamily, at 750,397 to 751,362
_0662
Psyr_0663: Psyr_0663 - nucleoside-binding protein, at 751,440 to 752,534
_0663
Psyr_0664: Psyr_0664 - ABC transporter, at 752,808 to 753,599
_0664
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 750.740 kb on + strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.839 kb on - strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.944 kb on + strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 750.945 kb on - strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.250 kb on + strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.251 kb on - strand, within Psyr_0662 at 751.325 kb on + strand at 751.441 kb on + strand at 751.441 kb on + strand at 751.441 kb on + strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.442 kb on - strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.474 kb on + strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.475 kb on - strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.477 kb on + strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.478 kb on - strand at 751.599 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.735 kb on + strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.736 kb on - strand, within Psyr_0663 at 751.820 kb on - strand, within Psyr_0663 at 751.820 kb on - strand, within Psyr_0663 at 751.859 kb on + strand, within Psyr_0663 at 751.876 kb on - strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.981 kb on + strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 751.982 kb on - strand, within Psyr_0663 at 752.023 kb on - strand, within Psyr_0663 at 752.051 kb on - strand, within Psyr_0663 at 752.051 kb on - strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.089 kb on + strand, within Psyr_0663 at 752.090 kb on - strand, within Psyr_0663 at 752.102 kb on - strand, within Psyr_0663 at 752.102 kb on - strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.113 kb on + strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.114 kb on - strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.128 kb on + strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.129 kb on - strand, within Psyr_0663 at 752.155 kb on + strand, within Psyr_0663 at 752.252 kb on - strand, within Psyr_0663 at 752.317 kb on + strand, within Psyr_0663 at 752.317 kb on + strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.318 kb on - strand, within Psyr_0663 at 752.380 kb on + strand, within Psyr_0663 at 752.413 kb on + strand, within Psyr_0663 at 752.413 kb on + strand, within Psyr_0663 at 752.413 kb on + strand, within Psyr_0663 at 752.541 kb on + strand at 752.541 kb on + strand at 752.569 kb on + strand at 752.587 kb on - strand at 752.587 kb on - strand at 752.607 kb on + strand at 752.607 kb on + strand at 752.607 kb on + strand at 752.607 kb on + strand at 752.607 kb on + strand at 752.608 kb on - strand at 752.608 kb on - strand at 752.608 kb on - strand at 752.632 kb on + strand at 752.638 kb on + strand at 752.638 kb on + strand at 752.638 kb on + strand at 752.638 kb on + strand at 752.639 kb on - strand at 752.650 kb on - strand at 752.679 kb on - strand at 752.679 kb on - strand at 752.761 kb on + strand at 752.761 kb on + strand at 752.761 kb on + strand at 752.761 kb on + strand at 752.762 kb on - strand at 752.762 kb on - strand at 752.762 kb on - strand at 752.762 kb on - strand at 752.762 kb on - strand at 752.886 kb on + strand at 752.886 kb on + strand at 752.886 kb on + strand at 752.886 kb on + strand at 752.886 kb on + strand at 752.887 kb on - strand at 752.887 kb on - strand at 752.887 kb on - strand at 752.887 kb on - strand at 753.021 kb on - strand, within Psyr_0664 at 753.094 kb on + strand, within Psyr_0664 at 753.094 kb on + strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.095 kb on - strand, within Psyr_0664 at 753.102 kb on - strand, within Psyr_0664 at 753.318 kb on + strand, within Psyr_0664
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 750,740 + Psyr_0662 0.36 -1.5 750,839 - Psyr_0662 0.46 -2.2 750,839 - Psyr_0662 0.46 -0.2 750,944 + Psyr_0662 0.57 +0.6 750,944 + Psyr_0662 0.57 -1.5 750,945 - Psyr_0662 0.57 -1.7 750,945 - Psyr_0662 0.57 -0.5 751,250 + Psyr_0662 0.88 +0.5 751,250 + Psyr_0662 0.88 -2.2 751,250 + Psyr_0662 0.88 -1.5 751,250 + Psyr_0662 0.88 +0.8 751,251 - Psyr_0662 0.88 +0.5 751,251 - Psyr_0662 0.88 +0.1 751,251 - Psyr_0662 0.88 -0.1 751,251 - Psyr_0662 0.88 -1.5 751,251 - Psyr_0662 0.88 +1.0 751,251 - Psyr_0662 0.88 -0.7 751,325 + -0.0 751,441 + +0.6 751,441 + -1.5 751,441 + -1.5 751,442 - -3.5 751,442 - -0.5 751,442 - +1.2 751,442 - -2.1 751,474 + +0.7 751,474 + +1.0 751,474 + -1.2 751,474 + +0.7 751,474 + -0.2 751,474 + +1.1 751,474 + +0.5 751,475 - +1.7 751,475 - +1.1 751,475 - -0.4 751,475 - -1.3 751,475 - +0.5 751,475 - +0.9 751,475 - +0.2 751,477 + +0.3 751,477 + +0.5 751,477 + -2.4 751,477 + +0.5 751,478 - -0.4 751,478 - +1.3 751,478 - +1.9 751,478 - +0.9 751,478 - -0.6 751,478 - -1.2 751,478 - -0.1 751,478 - +1.7 751,478 - -0.7 751,478 - +0.9 751,599 + Psyr_0663 0.15 +0.5 751,735 + Psyr_0663 0.27 +0.9 751,735 + Psyr_0663 0.27 -0.2 751,735 + Psyr_0663 0.27 +0.1 751,735 + Psyr_0663 0.27 +1.1 751,736 - Psyr_0663 0.27 -1.6 751,736 - Psyr_0663 0.27 -2.8 751,736 - Psyr_0663 0.27 +0.2 751,820 - Psyr_0663 0.35 +0.8 751,820 - Psyr_0663 0.35 +0.2 751,859 + Psyr_0663 0.38 +3.2 751,876 - Psyr_0663 0.40 +0.1 751,981 + Psyr_0663 0.49 -1.6 751,981 + Psyr_0663 0.49 -0.3 751,981 + Psyr_0663 0.49 -1.3 751,981 + Psyr_0663 0.49 -0.7 751,982 - Psyr_0663 0.49 -0.2 751,982 - Psyr_0663 0.49 +0.6 751,982 - Psyr_0663 0.49 -0.1 751,982 - Psyr_0663 0.49 -0.7 751,982 - Psyr_0663 0.49 +1.9 751,982 - Psyr_0663 0.49 -1.6 752,023 - Psyr_0663 0.53 -1.5 752,051 - Psyr_0663 0.56 -1.6 752,051 - Psyr_0663 0.56 -0.6 752,089 + Psyr_0663 0.59 +1.3 752,089 + Psyr_0663 0.59 -2.4 752,089 + Psyr_0663 0.59 +1.1 752,089 + Psyr_0663 0.59 -2.8 752,089 + Psyr_0663 0.59 -0.5 752,090 - Psyr_0663 0.59 -0.5 752,102 - Psyr_0663 0.60 -0.2 752,102 - Psyr_0663 0.60 -0.8 752,113 + Psyr_0663 0.61 +0.0 752,113 + Psyr_0663 0.61 -0.4 752,113 + Psyr_0663 0.61 -0.6 752,113 + Psyr_0663 0.61 -0.8 752,113 + Psyr_0663 0.61 +0.6 752,113 + Psyr_0663 0.61 -1.0 752,113 + Psyr_0663 0.61 +1.2 752,113 + Psyr_0663 0.61 -1.9 752,113 + Psyr_0663 0.61 +0.1 752,114 - Psyr_0663 0.62 -2.0 752,114 - Psyr_0663 0.62 -0.5 752,114 - Psyr_0663 0.62 -1.1 752,114 - Psyr_0663 0.62 +0.6 752,114 - Psyr_0663 0.62 +4.0 752,114 - Psyr_0663 0.62 +1.5 752,128 + Psyr_0663 0.63 -0.3 752,128 + Psyr_0663 0.63 +0.7 752,128 + Psyr_0663 0.63 +1.2 752,129 - Psyr_0663 0.63 +0.6 752,129 - Psyr_0663 0.63 +0.6 752,129 - Psyr_0663 0.63 +2.1 752,155 + Psyr_0663 0.65 +2.5 752,252 - Psyr_0663 0.74 -3.2 752,317 + Psyr_0663 0.80 -0.3 752,317 + Psyr_0663 0.80 +0.4 752,318 - Psyr_0663 0.80 -0.9 752,318 - Psyr_0663 0.80 +1.0 752,318 - Psyr_0663 0.80 +1.3 752,318 - Psyr_0663 0.80 -2.1 752,318 - Psyr_0663 0.80 -0.9 752,318 - Psyr_0663 0.80 -0.7 752,318 - Psyr_0663 0.80 -0.7 752,318 - Psyr_0663 0.80 -0.5 752,380 + Psyr_0663 0.86 -0.5 752,413 + Psyr_0663 0.89 +0.6 752,413 + Psyr_0663 0.89 -2.3 752,413 + Psyr_0663 0.89 +1.6 752,541 + +0.9 752,541 + +0.1 752,569 + +1.1 752,587 - +0.5 752,587 - -1.9 752,607 + +0.3 752,607 + -1.3 752,607 + -0.9 752,607 + -1.5 752,607 + -1.4 752,608 - -0.1 752,608 - +0.4 752,608 - +1.3 752,632 + -2.3 752,638 + -0.7 752,638 + +2.1 752,638 + -2.0 752,638 + +1.7 752,639 - +0.7 752,650 - -0.1 752,679 - +1.1 752,679 - -0.5 752,761 + -1.5 752,761 + +0.3 752,761 + -0.0 752,761 + -0.6 752,762 - -0.3 752,762 - +0.5 752,762 - +1.1 752,762 - -0.9 752,762 - -1.5 752,886 + +0.2 752,886 + -0.5 752,886 + +1.3 752,886 + +1.2 752,886 + +0.2 752,887 - -0.7 752,887 - -1.3 752,887 - -0.2 752,887 - +0.5 753,021 - Psyr_0664 0.27 -0.2 753,094 + Psyr_0664 0.36 +1.3 753,094 + Psyr_0664 0.36 -0.4 753,095 - Psyr_0664 0.36 +1.3 753,095 - Psyr_0664 0.36 +0.4 753,095 - Psyr_0664 0.36 -0.1 753,095 - Psyr_0664 0.36 -1.2 753,095 - Psyr_0664 0.36 +0.8 753,095 - Psyr_0664 0.36 -0.4 753,095 - Psyr_0664 0.36 +0.3 753,102 - Psyr_0664 0.37 +0.7 753,318 + Psyr_0664 0.64 -0.9
Or see this region's nucleotide sequence