Experiment: apoplastic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0652 and Psyr_0653 are separated by 432 nucleotides Psyr_0653 and Psyr_0654 overlap by 4 nucleotides
Psyr_0652: Psyr_0652 - Integrase, catalytic region, at 740,007 to 740,789
_0652
Psyr_0653: Psyr_0653 - transcriptional regulator, MerR family, at 741,222 to 741,620
_0653
Psyr_0654: Psyr_0654 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 741,617 to 743,815
_0654
Position (kb) 741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 740.299 kb on + strand, within Psyr_0652 at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.794 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.796 kb on + strand at 740.852 kb on - strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.923 kb on + strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.924 kb on - strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.927 kb on + strand at 740.928 kb on - strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.967 kb on + strand at 740.968 kb on - strand at 740.968 kb on - strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.107 kb on + strand at 741.505 kb on + strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.506 kb on - strand, within Psyr_0653 at 741.563 kb on - strand, within Psyr_0653 at 741.563 kb on - strand, within Psyr_0653 at 741.565 kb on + strand, within Psyr_0653 at 741.566 kb on - strand, within Psyr_0653 at 741.729 kb on + strand at 741.729 kb on + strand at 741.765 kb on + strand at 741.766 kb on - strand at 741.766 kb on - strand at 741.766 kb on - strand at 741.766 kb on - strand at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.046 kb on + strand, within Psyr_0654 at 742.047 kb on - strand, within Psyr_0654 at 742.047 kb on - strand, within Psyr_0654 at 742.183 kb on + strand, within Psyr_0654 at 742.184 kb on - strand at 742.184 kb on - strand, within Psyr_0654 at 742.184 kb on - strand, within Psyr_0654 at 742.184 kb on - strand, within Psyr_0654
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Lima bean remove 740,299 + Psyr_0652 0.37 +1.1 740,794 + +0.4 740,794 + -0.7 740,794 + -0.1 740,794 + -0.6 740,794 + +1.5 740,794 + -1.5 740,794 + -0.1 740,796 + -1.2 740,796 + +0.0 740,796 + +0.6 740,796 + +0.3 740,796 + +0.1 740,796 + +1.1 740,796 + +0.9 740,796 + +0.8 740,852 - +1.2 740,923 + -3.3 740,923 + -2.1 740,923 + -0.4 740,924 - -0.8 740,924 - +1.2 740,924 - +0.2 740,924 - +0.1 740,924 - -0.9 740,924 - +1.5 740,924 - +0.1 740,927 + -2.0 740,927 + -0.7 740,927 + -1.9 740,927 + -0.4 740,927 + +1.4 740,928 - +1.3 740,967 + -1.8 740,967 + -0.6 740,967 + +0.3 740,967 + +0.7 740,967 + -3.8 740,967 + -0.9 740,967 + -2.5 740,968 - -1.6 740,968 - +0.2 741,107 + +0.3 741,107 + +0.8 741,107 + -1.3 741,107 + +0.3 741,107 + -1.7 741,107 + -0.6 741,107 + +0.0 741,505 + Psyr_0653 0.71 +0.6 741,506 - Psyr_0653 0.71 -0.2 741,506 - Psyr_0653 0.71 -1.0 741,506 - Psyr_0653 0.71 -2.2 741,563 - Psyr_0653 0.85 -0.9 741,563 - Psyr_0653 0.85 -1.1 741,565 + Psyr_0653 0.86 -1.0 741,566 - Psyr_0653 0.86 +0.3 741,729 + -1.9 741,729 + -0.8 741,765 + +3.9 741,766 - +0.5 741,766 - +0.8 741,766 - +1.1 741,766 - -1.0 742,046 + Psyr_0654 0.20 -1.7 742,046 + Psyr_0654 0.20 +0.3 742,046 + Psyr_0654 0.20 +0.1 742,046 + Psyr_0654 0.20 +1.1 742,046 + Psyr_0654 0.20 -0.9 742,047 - Psyr_0654 0.20 +0.5 742,047 - Psyr_0654 0.20 -2.1 742,183 + Psyr_0654 0.26 +1.1 742,184 - +1.1 742,184 - Psyr_0654 0.26 +0.2 742,184 - Psyr_0654 0.26 -0.3 742,184 - Psyr_0654 0.26 -1.5
Or see this region's nucleotide sequence