Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0570

Experiment: apoplastic; Lima bean

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0569 and Psyr_0570 overlap by 1 nucleotidesPsyr_0570 and Psyr_0571 are separated by 0 nucleotides Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607 _0569 Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553 _0570 Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525 _0571 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.404 kb on + strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.405 kb on - strand, within Psyr_0569at 647.500 kb on + strandat 647.500 kb on + strandat 647.500 kb on + strandat 647.501 kb on - strandat 647.501 kb on - strandat 647.501 kb on - strandat 647.578 kb on - strandat 647.894 kb on + strand, within Psyr_0570at 648.106 kb on + strand, within Psyr_0570at 648.426 kb on + strand, within Psyr_0570at 648.426 kb on + strand, within Psyr_0570at 648.426 kb on + strand, within Psyr_0570at 648.426 kb on + strand, within Psyr_0570at 648.427 kb on - strand, within Psyr_0570at 648.427 kb on - strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.628 kb on + strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.629 kb on - strand, within Psyr_0570at 648.630 kb on + strand, within Psyr_0570at 648.630 kb on + strand, within Psyr_0570at 648.630 kb on + strand, within Psyr_0570at 648.630 kb on + strand, within Psyr_0570at 648.846 kb on + strand, within Psyr_0570at 648.853 kb on - strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.007 kb on + strand, within Psyr_0570at 649.008 kb on - strand, within Psyr_0570at 649.008 kb on - strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.011 kb on + strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.012 kb on - strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.080 kb on + strand, within Psyr_0570at 649.081 kb on - strand, within Psyr_0570at 649.081 kb on - strand, within Psyr_0570at 649.081 kb on - strand, within Psyr_0570at 649.081 kb on - strand, within Psyr_0570at 649.081 kb on - strand, within Psyr_0570at 649.096 kb on + strand, within Psyr_0570at 649.096 kb on + strand, within Psyr_0570at 649.534 kb on + strandat 649.534 kb on + strandat 649.565 kb on - strandat 649.622 kb on - strandat 649.774 kb on - strand, within Psyr_0571at 649.839 kb on - strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.862 kb on + strand, within Psyr_0571at 649.863 kb on - strand, within Psyr_0571at 650.015 kb on + strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.016 kb on - strand, within Psyr_0571at 650.062 kb on - strand, within Psyr_0571at 650.154 kb on + strand, within Psyr_0571at 650.155 kb on - strand, within Psyr_0571at 650.218 kb on + strand, within Psyr_0571at 650.428 kb on + strandat 650.432 kb on + strandat 650.432 kb on + strandat 650.536 kb on + strandat 650.536 kb on + strandat 650.544 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
remove
647,404 + Psyr_0569 0.86 -2.2
647,404 + Psyr_0569 0.86 -2.2
647,404 + Psyr_0569 0.86 +0.1
647,404 + Psyr_0569 0.86 -0.7
647,404 + Psyr_0569 0.86 -1.7
647,404 + Psyr_0569 0.86 +0.4
647,404 + Psyr_0569 0.86 -0.8
647,404 + Psyr_0569 0.86 -1.2
647,404 + Psyr_0569 0.86 +0.0
647,404 + Psyr_0569 0.86 +1.2
647,405 - Psyr_0569 0.86 -1.2
647,405 - Psyr_0569 0.86 -1.9
647,405 - Psyr_0569 0.86 -1.9
647,405 - Psyr_0569 0.86 -0.3
647,405 - Psyr_0569 0.86 +0.6
647,405 - Psyr_0569 0.86 +0.6
647,405 - Psyr_0569 0.86 +0.6
647,405 - Psyr_0569 0.86 -0.4
647,405 - Psyr_0569 0.86 +1.4
647,405 - Psyr_0569 0.86 +0.1
647,405 - Psyr_0569 0.86 +0.5
647,500 + -0.8
647,500 + +0.3
647,500 + -1.0
647,501 - +1.3
647,501 - -0.5
647,501 - +1.3
647,578 - -3.4
647,894 + Psyr_0570 0.15 +0.4
648,106 + Psyr_0570 0.26 -0.3
648,426 + Psyr_0570 0.42 -3.5
648,426 + Psyr_0570 0.42 -1.7
648,426 + Psyr_0570 0.42 -1.2
648,426 + Psyr_0570 0.42 -0.2
648,427 - Psyr_0570 0.42 +0.3
648,427 - Psyr_0570 0.42 -0.5
648,628 + Psyr_0570 0.52 -0.2
648,628 + Psyr_0570 0.52 +0.7
648,628 + Psyr_0570 0.52 -1.4
648,628 + Psyr_0570 0.52 +0.5
648,628 + Psyr_0570 0.52 +1.3
648,628 + Psyr_0570 0.52 -0.1
648,628 + Psyr_0570 0.52 -3.0
648,628 + Psyr_0570 0.52 -0.9
648,628 + Psyr_0570 0.52 +1.1
648,628 + Psyr_0570 0.52 +0.7
648,628 + Psyr_0570 0.52 -1.5
648,628 + Psyr_0570 0.52 -1.1
648,628 + Psyr_0570 0.52 +0.3
648,629 - Psyr_0570 0.52 +0.2
648,629 - Psyr_0570 0.52 +0.7
648,629 - Psyr_0570 0.52 -0.1
648,629 - Psyr_0570 0.52 -2.8
648,629 - Psyr_0570 0.52 +0.2
648,629 - Psyr_0570 0.52 -0.5
648,629 - Psyr_0570 0.52 -0.2
648,629 - Psyr_0570 0.52 -2.5
648,629 - Psyr_0570 0.52 -0.9
648,629 - Psyr_0570 0.52 -0.8
648,630 + Psyr_0570 0.53 +1.0
648,630 + Psyr_0570 0.53 -0.9
648,630 + Psyr_0570 0.53 -1.3
648,630 + Psyr_0570 0.53 -0.7
648,846 + Psyr_0570 0.64 -0.3
648,853 - Psyr_0570 0.64 +1.1
649,007 + Psyr_0570 0.72 -1.2
649,007 + Psyr_0570 0.72 +0.1
649,007 + Psyr_0570 0.72 -0.6
649,008 - Psyr_0570 0.72 -2.2
649,008 - Psyr_0570 0.72 -0.2
649,011 + Psyr_0570 0.72 -0.5
649,011 + Psyr_0570 0.72 +0.3
649,011 + Psyr_0570 0.72 -1.0
649,011 + Psyr_0570 0.72 +0.2
649,011 + Psyr_0570 0.72 +0.1
649,011 + Psyr_0570 0.72 -0.4
649,011 + Psyr_0570 0.72 +1.5
649,011 + Psyr_0570 0.72 -0.8
649,012 - Psyr_0570 0.72 -2.1
649,012 - Psyr_0570 0.72 +0.1
649,012 - Psyr_0570 0.72 -2.2
649,080 + Psyr_0570 0.76 -1.6
649,080 + Psyr_0570 0.76 +0.8
649,080 + Psyr_0570 0.76 +0.2
649,080 + Psyr_0570 0.76 +0.3
649,080 + Psyr_0570 0.76 +0.1
649,080 + Psyr_0570 0.76 +0.2
649,080 + Psyr_0570 0.76 +0.4
649,080 + Psyr_0570 0.76 +0.1
649,080 + Psyr_0570 0.76 +1.7
649,081 - Psyr_0570 0.76 -1.5
649,081 - Psyr_0570 0.76 -0.9
649,081 - Psyr_0570 0.76 +0.1
649,081 - Psyr_0570 0.76 +0.1
649,081 - Psyr_0570 0.76 +1.4
649,096 + Psyr_0570 0.76 +0.6
649,096 + Psyr_0570 0.76 +0.3
649,534 + -1.7
649,534 + -0.2
649,565 - -1.7
649,622 - -0.1
649,774 - Psyr_0571 0.23 +1.3
649,839 - Psyr_0571 0.29 -0.2
649,862 + Psyr_0571 0.32 -1.2
649,862 + Psyr_0571 0.32 -2.4
649,862 + Psyr_0571 0.32 -0.5
649,863 - Psyr_0571 0.32 -1.5
650,015 + Psyr_0571 0.47 +0.1
650,016 - Psyr_0571 0.48 -1.7
650,016 - Psyr_0571 0.48 +1.1
650,016 - Psyr_0571 0.48 -1.1
650,016 - Psyr_0571 0.48 +0.7
650,062 - Psyr_0571 0.52 -0.7
650,154 + Psyr_0571 0.62 +1.1
650,155 - Psyr_0571 0.62 -0.5
650,218 + Psyr_0571 0.68 +1.1
650,428 + -1.2
650,432 + +1.1
650,432 + -1.5
650,536 + +0.2
650,536 + -0.1
650,544 + -0.4

Or see this region's nucleotide sequence