Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0511

Experiment: apoplastic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0509 and Psyr_0510 are separated by 32 nucleotidesPsyr_0510 and Psyr_0511 are separated by 26 nucleotidesPsyr_0511 and Psyr_0512 are separated by 7 nucleotidesPsyr_0512 and Psyr_0513 are separated by 226 nucleotides Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785 _0509 Psyr_0510: Psyr_0510 - conserved hypothetical protein, at 566,818 to 567,342 _0510 Psyr_0511: Psyr_0511 - conserved hypothetical protein, at 567,369 to 567,665 _0511 Psyr_0512: Psyr_0512 - GCN5-related N-acetyltransferase, at 567,673 to 568,131 _0512 Psyr_0513: Psyr_0513 - amino acid ABC transporter substrate-binding protein, PAAT family, at 568,358 to 569,113 _0513 Position (kb) 567 568Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 566.545 kb on + strand, within Psyr_0509at 566.584 kb on + strandat 566.585 kb on - strandat 566.783 kb on + strandat 566.783 kb on + strandat 566.783 kb on + strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.784 kb on - strandat 566.849 kb on - strandat 566.921 kb on - strand, within Psyr_0510at 566.974 kb on + strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.239 kb on - strand, within Psyr_0510at 567.299 kb on - strandat 567.308 kb on - strandat 567.399 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.411 kb on + strand, within Psyr_0511at 567.412 kb on - strand, within Psyr_0511at 567.420 kb on + strand, within Psyr_0511at 567.421 kb on - strand, within Psyr_0511at 567.503 kb on + strand, within Psyr_0511at 567.504 kb on - strand, within Psyr_0511at 567.658 kb on - strandat 567.758 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.761 kb on + strand, within Psyr_0512at 567.762 kb on - strand, within Psyr_0512at 567.787 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.791 kb on + strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 567.792 kb on - strand, within Psyr_0512at 568.022 kb on + strand, within Psyr_0512at 568.023 kb on - strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.076 kb on + strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.077 kb on - strand, within Psyr_0512at 568.166 kb on + strandat 568.166 kb on + strandat 568.167 kb on - strandat 568.172 kb on + strandat 568.252 kb on - strandat 568.252 kb on - strandat 568.252 kb on - strandat 568.275 kb on + strandat 568.275 kb on + strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.276 kb on - strandat 568.322 kb on + strandat 568.322 kb on + strandat 568.322 kb on + strandat 568.323 kb on - strandat 568.323 kb on - strandat 568.323 kb on - strandat 568.544 kb on + strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.545 kb on - strand, within Psyr_0513at 568.634 kb on - strand, within Psyr_0513at 568.634 kb on - strand, within Psyr_0513at 568.661 kb on + strand, within Psyr_0513at 568.662 kb on - strand, within Psyr_0513at 568.662 kb on - strand, within Psyr_0513

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Lima bean
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566,545 + Psyr_0509 0.89 -0.3
566,584 + -0.3
566,585 - +0.9
566,783 + +1.1
566,783 + -1.3
566,783 + +0.7
566,784 - +3.8
566,784 - +0.6
566,784 - -0.6
566,784 - -0.6
566,849 - -2.5
566,921 - Psyr_0510 0.20 -0.2
566,974 + Psyr_0510 0.30 +1.4
567,239 - Psyr_0510 0.80 -0.6
567,239 - Psyr_0510 0.80 -1.2
567,239 - Psyr_0510 0.80 -0.2
567,239 - Psyr_0510 0.80 -0.1
567,299 - -1.1
567,308 - -1.7
567,399 + Psyr_0511 0.10 +0.4
567,411 + Psyr_0511 0.14 +1.3
567,411 + Psyr_0511 0.14 +0.9
567,411 + Psyr_0511 0.14 -0.3
567,412 - Psyr_0511 0.14 -0.9
567,420 + Psyr_0511 0.17 +3.7
567,421 - Psyr_0511 0.18 +0.8
567,503 + Psyr_0511 0.45 +1.6
567,504 - Psyr_0511 0.45 +1.2
567,658 - -2.5
567,758 + Psyr_0512 0.19 -0.8
567,761 + Psyr_0512 0.19 -0.3
567,761 + Psyr_0512 0.19 -0.6
567,762 - Psyr_0512 0.19 +1.3
567,787 + Psyr_0512 0.25 +0.5
567,791 + Psyr_0512 0.26 +0.8
567,791 + Psyr_0512 0.26 -0.7
567,791 + Psyr_0512 0.26 +0.6
567,791 + Psyr_0512 0.26 +1.0
567,791 + Psyr_0512 0.26 +0.1
567,791 + Psyr_0512 0.26 +1.5
567,791 + Psyr_0512 0.26 -0.0
567,791 + Psyr_0512 0.26 -0.9
567,791 + Psyr_0512 0.26 -1.0
567,791 + Psyr_0512 0.26 -0.1
567,791 + Psyr_0512 0.26 -0.2
567,792 - Psyr_0512 0.26 +1.4
567,792 - Psyr_0512 0.26 -1.5
567,792 - Psyr_0512 0.26 +2.1
567,792 - Psyr_0512 0.26 -0.9
567,792 - Psyr_0512 0.26 -0.8
567,792 - Psyr_0512 0.26 -1.4
567,792 - Psyr_0512 0.26 -1.8
567,792 - Psyr_0512 0.26 -0.9
568,022 + Psyr_0512 0.76 -0.0
568,023 - Psyr_0512 0.76 +0.2
568,076 + Psyr_0512 0.88 -0.4
568,076 + Psyr_0512 0.88 -1.6
568,076 + Psyr_0512 0.88 -0.2
568,076 + Psyr_0512 0.88 -0.0
568,076 + Psyr_0512 0.88 -0.9
568,077 - Psyr_0512 0.88 +0.7
568,077 - Psyr_0512 0.88 +0.8
568,077 - Psyr_0512 0.88 -1.7
568,166 + -0.5
568,166 + -1.9
568,167 - +0.6
568,172 + +1.1
568,252 - -1.5
568,252 - +0.5
568,252 - -0.6
568,275 + +1.4
568,275 + -0.6
568,276 - +0.5
568,276 - -0.6
568,276 - -0.2
568,322 + -1.4
568,322 + +0.2
568,322 + +0.7
568,323 - -0.6
568,323 - -0.8
568,323 - +1.5
568,544 + Psyr_0513 0.25 -0.4
568,545 - Psyr_0513 0.25 -1.5
568,545 - Psyr_0513 0.25 -0.9
568,545 - Psyr_0513 0.25 +0.2
568,634 - Psyr_0513 0.37 -1.1
568,634 - Psyr_0513 0.37 +0.9
568,661 + Psyr_0513 0.40 +0.3
568,662 - Psyr_0513 0.40 +0.1
568,662 - Psyr_0513 0.40 -0.2

Or see this region's nucleotide sequence